Results 21 - 40 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17134 | 3' | -54.2 | NC_004333.2 | + | 46870 | 0.69 | 0.537919 |
Target: 5'- -cGUGCGCUcgaaagaaaccgaGUGCCGCGa---GCGCCu -3' miRNA: 3'- uuCAUGCGA-------------CAUGGCGCgaacUGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 3550 | 0.69 | 0.539014 |
Target: 5'- ---aACGCgGUGCCGCGCagcGCGUCg -3' miRNA: 3'- uucaUGCGaCAUGGCGCGaacUGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 18848 | 0.69 | 0.539014 |
Target: 5'- cAGUACGCaGuUGCCGUGCgcaacgcaUUGcCGCCg -3' miRNA: 3'- uUCAUGCGaC-AUGGCGCG--------AACuGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 45054 | 0.69 | 0.539014 |
Target: 5'- ---aACGCUGaacACCGCGCggccGCGCCc -3' miRNA: 3'- uucaUGCGACa--UGGCGCGaac-UGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 33144 | 0.69 | 0.548897 |
Target: 5'- ---cACGCUGaccgaguUGCCaGCGCUcGugGCCg -3' miRNA: 3'- uucaUGCGAC-------AUGG-CGCGAaCugCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 31621 | 0.69 | 0.549998 |
Target: 5'- -cGgcCGCUGUgGCCGCGCgcgUGAacaGUCg -3' miRNA: 3'- uuCauGCGACA-UGGCGCGa--ACUg--CGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 7152 | 0.69 | 0.549998 |
Target: 5'- -uGUACGCa--ACUGCGCgaGACGUCa -3' miRNA: 3'- uuCAUGCGacaUGGCGCGaaCUGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 7779 | 0.69 | 0.554412 |
Target: 5'- -cGU-CGCUGU-CCGCGCcgaucaccgcuacGACGCCg -3' miRNA: 3'- uuCAuGCGACAuGGCGCGaa-----------CUGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 43305 | 0.69 | 0.561051 |
Target: 5'- --aUGCGCUcGUGCCGaucgaGCc-GACGCCg -3' miRNA: 3'- uucAUGCGA-CAUGGCg----CGaaCUGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 21785 | 0.68 | 0.572164 |
Target: 5'- ---gGCGaaGUGCCGCGCgaGugGCa -3' miRNA: 3'- uucaUGCgaCAUGGCGCGaaCugCGg -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 42732 | 0.68 | 0.583328 |
Target: 5'- ---gGCGCUGUugCGgGCUgcucgacgggaGACGCUg -3' miRNA: 3'- uucaUGCGACAugGCgCGAa----------CUGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 29187 | 0.68 | 0.583328 |
Target: 5'- cGGgcCGCUGcacgaacCCGCGCaUGGCGUCg -3' miRNA: 3'- uUCauGCGACau-----GGCGCGaACUGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 44840 | 0.68 | 0.605776 |
Target: 5'- ---gACGCUG-GCCGCGa--GACGCUg -3' miRNA: 3'- uucaUGCGACaUGGCGCgaaCUGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 25967 | 0.68 | 0.605776 |
Target: 5'- cAGGgcgGCGaaGcGCgGCGCUUGGCGCUc -3' miRNA: 3'- -UUCa--UGCgaCaUGgCGCGAACUGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 15593 | 0.68 | 0.605776 |
Target: 5'- ----cCGCUaacAUCGCGCUUGACGCg -3' miRNA: 3'- uucauGCGAca-UGGCGCGAACUGCGg -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 17131 | 0.67 | 0.628318 |
Target: 5'- cGGcGCgGCUGgaacACCGCGagcaUGACGCCa -3' miRNA: 3'- uUCaUG-CGACa---UGGCGCga--ACUGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 1115 | 0.67 | 0.6396 |
Target: 5'- cAGUcgcGCGCgaagucgGUGCCGUGCUgcGCGCg -3' miRNA: 3'- uUCA---UGCGa------CAUGGCGCGAacUGCGg -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 40211 | 0.67 | 0.6396 |
Target: 5'- uGGcACGCUGUACgaaGUGCgcGACGCg -3' miRNA: 3'- uUCaUGCGACAUGg--CGCGaaCUGCGg -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 8216 | 0.67 | 0.6396 |
Target: 5'- ---aACGCUGcGCgGCaGgaUGACGCCg -3' miRNA: 3'- uucaUGCGACaUGgCG-CgaACUGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 44611 | 0.67 | 0.6396 |
Target: 5'- -cGUAcCGCUGccGCCGCGCaUGcaaGCCg -3' miRNA: 3'- uuCAU-GCGACa-UGGCGCGaACug-CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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