miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17134 3' -54.2 NC_004333.2 + 198 0.66 0.706746
Target:  5'- -cGUGCGCcc-GCCG-GCUUGgcuuGCGCCa -3'
miRNA:   3'- uuCAUGCGacaUGGCgCGAAC----UGCGG- -5'
17134 3' -54.2 NC_004333.2 + 1115 0.67 0.6396
Target:  5'- cAGUcgcGCGCgaagucgGUGCCGUGCUgcGCGCg -3'
miRNA:   3'- uUCA---UGCGa------CAUGGCGCGAacUGCGg -5'
17134 3' -54.2 NC_004333.2 + 1732 0.66 0.739443
Target:  5'- ---aGCGCUGUuuccgACCGCGCa--GCGCa -3'
miRNA:   3'- uucaUGCGACA-----UGGCGCGaacUGCGg -5'
17134 3' -54.2 NC_004333.2 + 2941 0.75 0.245325
Target:  5'- -cGUGcCGCUGUagcccugcaGCUGCGCgagcgUGACGCCc -3'
miRNA:   3'- uuCAU-GCGACA---------UGGCGCGa----ACUGCGG- -5'
17134 3' -54.2 NC_004333.2 + 3550 0.69 0.539014
Target:  5'- ---aACGCgGUGCCGCGCagcGCGUCg -3'
miRNA:   3'- uucaUGCGaCAUGGCGCGaacUGCGG- -5'
17134 3' -54.2 NC_004333.2 + 4852 0.69 0.528105
Target:  5'- -cGUACGCgcgcGCCGUGCc-GAUGCCg -3'
miRNA:   3'- uuCAUGCGaca-UGGCGCGaaCUGCGG- -5'
17134 3' -54.2 NC_004333.2 + 5137 0.72 0.368567
Target:  5'- ---gACGCUGUucagcGCCGCGCc-GACGUCg -3'
miRNA:   3'- uucaUGCGACA-----UGGCGCGaaCUGCGG- -5'
17134 3' -54.2 NC_004333.2 + 6668 0.67 0.650874
Target:  5'- ---gGCGCUGgGCgGCGCgccgUGGCGgCg -3'
miRNA:   3'- uucaUGCGACaUGgCGCGa---ACUGCgG- -5'
17134 3' -54.2 NC_004333.2 + 7152 0.69 0.549998
Target:  5'- -uGUACGCa--ACUGCGCgaGACGUCa -3'
miRNA:   3'- uuCAUGCGacaUGGCGCGaaCUGCGG- -5'
17134 3' -54.2 NC_004333.2 + 7779 0.69 0.554412
Target:  5'- -cGU-CGCUGU-CCGCGCcgaucaccgcuacGACGCCg -3'
miRNA:   3'- uuCAuGCGACAuGGCGCGaa-----------CUGCGG- -5'
17134 3' -54.2 NC_004333.2 + 8216 0.67 0.6396
Target:  5'- ---aACGCUGcGCgGCaGgaUGACGCCg -3'
miRNA:   3'- uucaUGCGACaUGgCG-CgaACUGCGG- -5'
17134 3' -54.2 NC_004333.2 + 8947 0.66 0.728641
Target:  5'- aAGGUGCGCggcuaACCGCGCcgca-GCCg -3'
miRNA:   3'- -UUCAUGCGaca--UGGCGCGaacugCGG- -5'
17134 3' -54.2 NC_004333.2 + 9679 0.7 0.495903
Target:  5'- cGGUGCGCaaccgGccgaUGCCGCGCcggcUGGCGCUg -3'
miRNA:   3'- uUCAUGCGa----C----AUGGCGCGa---ACUGCGG- -5'
17134 3' -54.2 NC_004333.2 + 10848 0.94 0.011181
Target:  5'- cAAGUACGCUGU-CaCGCGCUUGACGCCg -3'
miRNA:   3'- -UUCAUGCGACAuG-GCGCGAACUGCGG- -5'
17134 3' -54.2 NC_004333.2 + 11278 0.66 0.706746
Target:  5'- cGAGUuCGCguUGCCGCGCgcugUUGaacuGCGCCg -3'
miRNA:   3'- -UUCAuGCGacAUGGCGCG----AAC----UGCGG- -5'
17134 3' -54.2 NC_004333.2 + 11809 0.67 0.66213
Target:  5'- cGGUGCcggucgGCUGccggacAUCGCGCagGACGCCa -3'
miRNA:   3'- uUCAUG------CGACa-----UGGCGCGaaCUGCGG- -5'
17134 3' -54.2 NC_004333.2 + 12381 0.66 0.695677
Target:  5'- ---cGCGCgagGcUGgCGCGCagGACGCCg -3'
miRNA:   3'- uucaUGCGa--C-AUgGCGCGaaCUGCGG- -5'
17134 3' -54.2 NC_004333.2 + 13730 0.66 0.739443
Target:  5'- ---cAUGCUcGUGCCguugaagucgaGCGCguagGACGCCg -3'
miRNA:   3'- uucaUGCGA-CAUGG-----------CGCGaa--CUGCGG- -5'
17134 3' -54.2 NC_004333.2 + 14390 0.66 0.739443
Target:  5'- aGAGgcgGCGaacgGUGCCGCGCUgaucGACauGCUg -3'
miRNA:   3'- -UUCa--UGCga--CAUGGCGCGAa---CUG--CGG- -5'
17134 3' -54.2 NC_004333.2 + 15593 0.68 0.605776
Target:  5'- ----cCGCUaacAUCGCGCUUGACGCg -3'
miRNA:   3'- uucauGCGAca-UGGCGCGAACUGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.