Results 21 - 40 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17134 | 3' | -54.2 | NC_004333.2 | + | 16840 | 0.66 | 0.717738 |
Target: 5'- cGGUACGCcuUGCCGUGUc-GGCGCa -3' miRNA: 3'- uUCAUGCGacAUGGCGCGaaCUGCGg -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 17131 | 0.67 | 0.628318 |
Target: 5'- cGGcGCgGCUGgaacACCGCGagcaUGACGCCa -3' miRNA: 3'- uUCaUG-CGACa---UGGCGCga--ACUGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 18032 | 0.67 | 0.650874 |
Target: 5'- cGAGUucuacGCGCUG-AUCGCGCUgccCGCUg -3' miRNA: 3'- -UUCA-----UGCGACaUGGCGCGAacuGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 18542 | 0.66 | 0.706746 |
Target: 5'- cGGGUACGCcuccgGUGCCGgGUU--GCGCg -3' miRNA: 3'- -UUCAUGCGa----CAUGGCgCGAacUGCGg -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 18788 | 0.66 | 0.717738 |
Target: 5'- ----uCGCUGaACCGCGCUUaucGCGCg -3' miRNA: 3'- uucauGCGACaUGGCGCGAAc--UGCGg -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 18848 | 0.69 | 0.539014 |
Target: 5'- cAGUACGCaGuUGCCGUGCgcaacgcaUUGcCGCCg -3' miRNA: 3'- uUCAUGCGaC-AUGGCGCG--------AACuGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 19502 | 0.72 | 0.377544 |
Target: 5'- uGGcGCGCUG-GCgGCGCUcGugGCCg -3' miRNA: 3'- uUCaUGCGACaUGgCGCGAaCugCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 20965 | 0.71 | 0.424576 |
Target: 5'- cAAGUagcacGCGCUGcGCCGgGCUcGuCGCCg -3' miRNA: 3'- -UUCA-----UGCGACaUGGCgCGAaCuGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 21785 | 0.68 | 0.572164 |
Target: 5'- ---gGCGaaGUGCCGCGCgaGugGCa -3' miRNA: 3'- uucaUGCgaCAUGGCGCGaaCugCGg -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 25189 | 0.67 | 0.650874 |
Target: 5'- -cGUGCGCgccGCCGUGCU---CGCCg -3' miRNA: 3'- uuCAUGCGacaUGGCGCGAacuGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 25716 | 0.77 | 0.192311 |
Target: 5'- cAAG-ACGCUuucgACCGCGCUgacGACGCCg -3' miRNA: 3'- -UUCaUGCGAca--UGGCGCGAa--CUGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 25883 | 0.69 | 0.534641 |
Target: 5'- uGGUGCGCgagcgccaagcGCCGCGCUUcGcCGCCc -3' miRNA: 3'- uUCAUGCGaca--------UGGCGCGAA-CuGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 25967 | 0.68 | 0.605776 |
Target: 5'- cAGGgcgGCGaaGcGCgGCGCUUGGCGCUc -3' miRNA: 3'- -UUCa--UGCgaCaUGgCGCGAACUGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 28552 | 0.69 | 0.505475 |
Target: 5'- --uUGCGC-GUGCCGCGUUgcgacugUGGCGCg -3' miRNA: 3'- uucAUGCGaCAUGGCGCGA-------ACUGCGg -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 28878 | 0.71 | 0.424576 |
Target: 5'- ---aGCGCUcGUGCCGCGCgaucGCGCUc -3' miRNA: 3'- uucaUGCGA-CAUGGCGCGaac-UGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 29187 | 0.68 | 0.583328 |
Target: 5'- cGGgcCGCUGcacgaacCCGCGCaUGGCGUCg -3' miRNA: 3'- uUCauGCGACau-----GGCGCGaACUGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 29971 | 0.72 | 0.351057 |
Target: 5'- ---aGCGCg--GCCGCGCUgccaccGGCGCCg -3' miRNA: 3'- uucaUGCGacaUGGCGCGAa-----CUGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 30072 | 0.74 | 0.265521 |
Target: 5'- cGAGcgGCGCcgcaugGUGCuCGCGCUcGGCGCCg -3' miRNA: 3'- -UUCa-UGCGa-----CAUG-GCGCGAaCUGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 30699 | 0.66 | 0.706746 |
Target: 5'- ---cGCGCcuUGCCGCGCUgcugcacgaccUGGCGUCc -3' miRNA: 3'- uucaUGCGacAUGGCGCGA-----------ACUGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 31231 | 0.66 | 0.728641 |
Target: 5'- cGGU-CGCgacgGCCGCGCggcgcaGCGCCg -3' miRNA: 3'- uUCAuGCGaca-UGGCGCGaac---UGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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