Results 1 - 20 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17134 | 3' | -54.2 | NC_004333.2 | + | 48176 | 0.66 | 0.717738 |
Target: 5'- ---gGCGCgGUGCgCGCGCccggUUGcCGCCu -3' miRNA: 3'- uucaUGCGaCAUG-GCGCG----AACuGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 47472 | 0.66 | 0.684544 |
Target: 5'- ---cGCGCcGgcggcgacUGCCGCGCUgaacgaGGCGCCg -3' miRNA: 3'- uucaUGCGaC--------AUGGCGCGAa-----CUGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 46870 | 0.69 | 0.537919 |
Target: 5'- -cGUGCGCUcgaaagaaaccgaGUGCCGCGa---GCGCCu -3' miRNA: 3'- uuCAUGCGA-------------CAUGGCGCgaacUGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 45054 | 0.69 | 0.539014 |
Target: 5'- ---aACGCUGaacACCGCGCggccGCGCCc -3' miRNA: 3'- uucaUGCGACa--UGGCGCGaac-UGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 45006 | 0.77 | 0.192311 |
Target: 5'- cGGcGCGCUGUccggccgcucgACCGCGCgUGGCGCUg -3' miRNA: 3'- uUCaUGCGACA-----------UGGCGCGaACUGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 44840 | 0.68 | 0.605776 |
Target: 5'- ---gACGCUG-GCCGCGa--GACGCUg -3' miRNA: 3'- uucaUGCGACaUGGCGCgaaCUGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 44611 | 0.67 | 0.6396 |
Target: 5'- -cGUAcCGCUGccGCCGCGCaUGcaaGCCg -3' miRNA: 3'- uuCAU-GCGACa-UGGCGCGaACug-CGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 44466 | 0.77 | 0.192311 |
Target: 5'- cAGgcCGUUGUACCGCGCac-GCGCCg -3' miRNA: 3'- uUCauGCGACAUGGCGCGaacUGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 44378 | 0.7 | 0.485365 |
Target: 5'- cAGGUGCGCUGcucgGCgGCGCgu-GCGCg -3' miRNA: 3'- -UUCAUGCGACa---UGgCGCGaacUGCGg -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 43450 | 0.66 | 0.717738 |
Target: 5'- ---cGCGCgcauCgCGCGCUUGcGCGCCg -3' miRNA: 3'- uucaUGCGacauG-GCGCGAAC-UGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 43305 | 0.69 | 0.561051 |
Target: 5'- --aUGCGCUcGUGCCGaucgaGCc-GACGCCg -3' miRNA: 3'- uucAUGCGA-CAUGGCg----CGaaCUGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 42732 | 0.68 | 0.583328 |
Target: 5'- ---gGCGCUGUugCGgGCUgcucgacgggaGACGCUg -3' miRNA: 3'- uucaUGCGACAugGCgCGAa----------CUGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 40211 | 0.67 | 0.6396 |
Target: 5'- uGGcACGCUGUACgaaGUGCgcGACGCg -3' miRNA: 3'- uUCaUGCGACAUGg--CGCGaaCUGCGg -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 40107 | 0.66 | 0.684544 |
Target: 5'- --uUGCGaggcGU-CCGCGCcgUGGCGCCg -3' miRNA: 3'- uucAUGCga--CAuGGCGCGa-ACUGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 38944 | 0.7 | 0.485365 |
Target: 5'- cGGGUGCGCggacggGCgGCGUUcguaUGGCGCCc -3' miRNA: 3'- -UUCAUGCGaca---UGgCGCGA----ACUGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 38372 | 0.69 | 0.50334 |
Target: 5'- ---cGCGCUGUcgcgugucgggugcGCCG-GCgUGACGCCg -3' miRNA: 3'- uucaUGCGACA--------------UGGCgCGaACUGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 37243 | 0.72 | 0.377544 |
Target: 5'- uGAGcgGCGUgucGCCGCGCUgcggGAUGCCg -3' miRNA: 3'- -UUCa-UGCGacaUGGCGCGAa---CUGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 33144 | 0.69 | 0.548897 |
Target: 5'- ---cACGCUGaccgaguUGCCaGCGCUcGugGCCg -3' miRNA: 3'- uucaUGCGAC-------AUGG-CGCGAaCugCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 33108 | 0.66 | 0.728641 |
Target: 5'- --cUACGCacGUGCgGCGCUcaaagcgaucGACGCCg -3' miRNA: 3'- uucAUGCGa-CAUGgCGCGAa---------CUGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 31621 | 0.69 | 0.549998 |
Target: 5'- -cGgcCGCUGUgGCCGCGCgcgUGAacaGUCg -3' miRNA: 3'- uuCauGCGACA-UGGCGCGa--ACUg--CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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