miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17134 3' -54.2 NC_004333.2 + 10848 0.94 0.011181
Target:  5'- cAAGUACGCUGU-CaCGCGCUUGACGCCg -3'
miRNA:   3'- -UUCAUGCGACAuG-GCGCGAACUGCGG- -5'
17134 3' -54.2 NC_004333.2 + 29187 0.68 0.583328
Target:  5'- cGGgcCGCUGcacgaacCCGCGCaUGGCGUCg -3'
miRNA:   3'- uUCauGCGACau-----GGCGCGaACUGCGG- -5'
17134 3' -54.2 NC_004333.2 + 40211 0.67 0.6396
Target:  5'- uGGcACGCUGUACgaaGUGCgcGACGCg -3'
miRNA:   3'- uUCaUGCGACAUGg--CGCGaaCUGCGg -5'
17134 3' -54.2 NC_004333.2 + 13730 0.66 0.739443
Target:  5'- ---cAUGCUcGUGCCguugaagucgaGCGCguagGACGCCg -3'
miRNA:   3'- uucaUGCGA-CAUGG-----------CGCGaa--CUGCGG- -5'
17134 3' -54.2 NC_004333.2 + 19502 0.72 0.377544
Target:  5'- uGGcGCGCUG-GCgGCGCUcGugGCCg -3'
miRNA:   3'- uUCaUGCGACaUGgCGCGAaCugCGG- -5'
17134 3' -54.2 NC_004333.2 + 28878 0.71 0.424576
Target:  5'- ---aGCGCUcGUGCCGCGCgaucGCGCUc -3'
miRNA:   3'- uucaUGCGA-CAUGGCGCGaac-UGCGG- -5'
17134 3' -54.2 NC_004333.2 + 38372 0.69 0.50334
Target:  5'- ---cGCGCUGUcgcgugucgggugcGCCG-GCgUGACGCCg -3'
miRNA:   3'- uucaUGCGACA--------------UGGCgCGaACUGCGG- -5'
17134 3' -54.2 NC_004333.2 + 4852 0.69 0.528105
Target:  5'- -cGUACGCgcgcGCCGUGCc-GAUGCCg -3'
miRNA:   3'- uuCAUGCGaca-UGGCGCGaaCUGCGG- -5'
17134 3' -54.2 NC_004333.2 + 3550 0.69 0.539014
Target:  5'- ---aACGCgGUGCCGCGCagcGCGUCg -3'
miRNA:   3'- uucaUGCGaCAUGGCGCGaacUGCGG- -5'
17134 3' -54.2 NC_004333.2 + 21785 0.68 0.572164
Target:  5'- ---gGCGaaGUGCCGCGCgaGugGCa -3'
miRNA:   3'- uucaUGCgaCAUGGCGCGaaCugCGg -5'
17134 3' -54.2 NC_004333.2 + 45054 0.69 0.539014
Target:  5'- ---aACGCUGaacACCGCGCggccGCGCCc -3'
miRNA:   3'- uucaUGCGACa--UGGCGCGaac-UGCGG- -5'
17134 3' -54.2 NC_004333.2 + 46870 0.69 0.537919
Target:  5'- -cGUGCGCUcgaaagaaaccgaGUGCCGCGa---GCGCCu -3'
miRNA:   3'- uuCAUGCGA-------------CAUGGCGCgaacUGCGG- -5'
17134 3' -54.2 NC_004333.2 + 45006 0.77 0.192311
Target:  5'- cGGcGCGCUGUccggccgcucgACCGCGCgUGGCGCUg -3'
miRNA:   3'- uUCaUGCGACA-----------UGGCGCGaACUGCGG- -5'
17134 3' -54.2 NC_004333.2 + 31621 0.69 0.549998
Target:  5'- -cGgcCGCUGUgGCCGCGCgcgUGAacaGUCg -3'
miRNA:   3'- uuCauGCGACA-UGGCGCGa--ACUg--CGG- -5'
17134 3' -54.2 NC_004333.2 + 2941 0.75 0.245325
Target:  5'- -cGUGcCGCUGUagcccugcaGCUGCGCgagcgUGACGCCc -3'
miRNA:   3'- uuCAU-GCGACA---------UGGCGCGa----ACUGCGG- -5'
17134 3' -54.2 NC_004333.2 + 25883 0.69 0.534641
Target:  5'- uGGUGCGCgagcgccaagcGCCGCGCUUcGcCGCCc -3'
miRNA:   3'- uUCAUGCGaca--------UGGCGCGAA-CuGCGG- -5'
17134 3' -54.2 NC_004333.2 + 43305 0.69 0.561051
Target:  5'- --aUGCGCUcGUGCCGaucgaGCc-GACGCCg -3'
miRNA:   3'- uucAUGCGA-CAUGGCg----CGaaCUGCGG- -5'
17134 3' -54.2 NC_004333.2 + 44840 0.68 0.605776
Target:  5'- ---gACGCUG-GCCGCGa--GACGCUg -3'
miRNA:   3'- uucaUGCGACaUGGCGCgaaCUGCGG- -5'
17134 3' -54.2 NC_004333.2 + 29971 0.72 0.351057
Target:  5'- ---aGCGCg--GCCGCGCUgccaccGGCGCCg -3'
miRNA:   3'- uucaUGCGacaUGGCGCGAa-----CUGCGG- -5'
17134 3' -54.2 NC_004333.2 + 44378 0.7 0.485365
Target:  5'- cAGGUGCGCUGcucgGCgGCGCgu-GCGCg -3'
miRNA:   3'- -UUCAUGCGACa---UGgCGCGaacUGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.