miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17134 3' -54.2 NC_004333.2 + 1115 0.67 0.6396
Target:  5'- cAGUcgcGCGCgaagucgGUGCCGUGCUgcGCGCg -3'
miRNA:   3'- uUCA---UGCGa------CAUGGCGCGAacUGCGg -5'
17134 3' -54.2 NC_004333.2 + 29187 0.68 0.583328
Target:  5'- cGGgcCGCUGcacgaacCCGCGCaUGGCGUCg -3'
miRNA:   3'- uUCauGCGACau-----GGCGCGaACUGCGG- -5'
17134 3' -54.2 NC_004333.2 + 31621 0.69 0.549998
Target:  5'- -cGgcCGCUGUgGCCGCGCgcgUGAacaGUCg -3'
miRNA:   3'- uuCauGCGACA-UGGCGCGa--ACUg--CGG- -5'
17134 3' -54.2 NC_004333.2 + 43450 0.66 0.717738
Target:  5'- ---cGCGCgcauCgCGCGCUUGcGCGCCg -3'
miRNA:   3'- uucaUGCGacauG-GCGCGAAC-UGCGG- -5'
17134 3' -54.2 NC_004333.2 + 44611 0.67 0.6396
Target:  5'- -cGUAcCGCUGccGCCGCGCaUGcaaGCCg -3'
miRNA:   3'- uuCAU-GCGACa-UGGCGCGaACug-CGG- -5'
17134 3' -54.2 NC_004333.2 + 45054 0.69 0.539014
Target:  5'- ---aACGCUGaacACCGCGCggccGCGCCc -3'
miRNA:   3'- uucaUGCGACa--UGGCGCGaac-UGCGG- -5'
17134 3' -54.2 NC_004333.2 + 18788 0.66 0.717738
Target:  5'- ----uCGCUGaACCGCGCUUaucGCGCg -3'
miRNA:   3'- uucauGCGACaUGGCGCGAAc--UGCGg -5'
17134 3' -54.2 NC_004333.2 + 18848 0.69 0.539014
Target:  5'- cAGUACGCaGuUGCCGUGCgcaacgcaUUGcCGCCg -3'
miRNA:   3'- uUCAUGCGaC-AUGGCGCG--------AACuGCGG- -5'
17134 3' -54.2 NC_004333.2 + 3550 0.69 0.539014
Target:  5'- ---aACGCgGUGCCGCGCagcGCGUCg -3'
miRNA:   3'- uucaUGCGaCAUGGCGCGaacUGCGG- -5'
17134 3' -54.2 NC_004333.2 + 31231 0.66 0.728641
Target:  5'- cGGU-CGCgacgGCCGCGCggcgcaGCGCCg -3'
miRNA:   3'- uUCAuGCGaca-UGGCGCGaac---UGCGG- -5'
17134 3' -54.2 NC_004333.2 + 43305 0.69 0.561051
Target:  5'- --aUGCGCUcGUGCCGaucgaGCc-GACGCCg -3'
miRNA:   3'- uucAUGCGA-CAUGGCg----CGaaCUGCGG- -5'
17134 3' -54.2 NC_004333.2 + 15593 0.68 0.605776
Target:  5'- ----cCGCUaacAUCGCGCUUGACGCg -3'
miRNA:   3'- uucauGCGAca-UGGCGCGAACUGCGg -5'
17134 3' -54.2 NC_004333.2 + 17131 0.67 0.628318
Target:  5'- cGGcGCgGCUGgaacACCGCGagcaUGACGCCa -3'
miRNA:   3'- uUCaUG-CGACa---UGGCGCga--ACUGCGG- -5'
17134 3' -54.2 NC_004333.2 + 25189 0.67 0.650874
Target:  5'- -cGUGCGCgccGCCGUGCU---CGCCg -3'
miRNA:   3'- uuCAUGCGacaUGGCGCGAacuGCGG- -5'
17134 3' -54.2 NC_004333.2 + 25716 0.77 0.192311
Target:  5'- cAAG-ACGCUuucgACCGCGCUgacGACGCCg -3'
miRNA:   3'- -UUCaUGCGAca--UGGCGCGAa--CUGCGG- -5'
17134 3' -54.2 NC_004333.2 + 30699 0.66 0.706746
Target:  5'- ---cGCGCcuUGCCGCGCUgcugcacgaccUGGCGUCc -3'
miRNA:   3'- uucaUGCGacAUGGCGCGA-----------ACUGCGG- -5'
17134 3' -54.2 NC_004333.2 + 37243 0.72 0.377544
Target:  5'- uGAGcgGCGUgucGCCGCGCUgcggGAUGCCg -3'
miRNA:   3'- -UUCa-UGCGacaUGGCGCGAa---CUGCGG- -5'
17134 3' -54.2 NC_004333.2 + 5137 0.72 0.368567
Target:  5'- ---gACGCUGUucagcGCCGCGCc-GACGUCg -3'
miRNA:   3'- uucaUGCGACA-----UGGCGCGaaCUGCGG- -5'
17134 3' -54.2 NC_004333.2 + 30072 0.74 0.265521
Target:  5'- cGAGcgGCGCcgcaugGUGCuCGCGCUcGGCGCCg -3'
miRNA:   3'- -UUCa-UGCGa-----CAUG-GCGCGAaCUGCGG- -5'
17134 3' -54.2 NC_004333.2 + 31312 0.74 0.265521
Target:  5'- cGAGacgGCGCUGcGCCGCGCggccgucGCGCCg -3'
miRNA:   3'- -UUCa--UGCGACaUGGCGCGaac----UGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.