Results 1 - 20 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17134 | 3' | -54.2 | NC_004333.2 | + | 28552 | 0.69 | 0.505475 |
Target: 5'- --uUGCGC-GUGCCGCGUUgcgacugUGGCGCg -3' miRNA: 3'- uucAUGCGaCAUGGCGCGA-------ACUGCGg -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 25189 | 0.67 | 0.650874 |
Target: 5'- -cGUGCGCgccGCCGUGCU---CGCCg -3' miRNA: 3'- uuCAUGCGacaUGGCGCGAacuGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 17131 | 0.67 | 0.628318 |
Target: 5'- cGGcGCgGCUGgaacACCGCGagcaUGACGCCa -3' miRNA: 3'- uUCaUG-CGACa---UGGCGCga--ACUGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 15593 | 0.68 | 0.605776 |
Target: 5'- ----cCGCUaacAUCGCGCUUGACGCg -3' miRNA: 3'- uucauGCGAca-UGGCGCGAACUGCGg -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 25967 | 0.68 | 0.605776 |
Target: 5'- cAGGgcgGCGaaGcGCgGCGCUUGGCGCUc -3' miRNA: 3'- -UUCa--UGCgaCaUGgCGCGAACUGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 42732 | 0.68 | 0.583328 |
Target: 5'- ---gGCGCUGUugCGgGCUgcucgacgggaGACGCUg -3' miRNA: 3'- uucaUGCGACAugGCgCGAa----------CUGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 7779 | 0.69 | 0.554412 |
Target: 5'- -cGU-CGCUGU-CCGCGCcgaucaccgcuacGACGCCg -3' miRNA: 3'- uuCAuGCGACAuGGCGCGaa-----------CUGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 7152 | 0.69 | 0.549998 |
Target: 5'- -uGUACGCa--ACUGCGCgaGACGUCa -3' miRNA: 3'- uuCAUGCGacaUGGCGCGaaCUGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 33144 | 0.69 | 0.548897 |
Target: 5'- ---cACGCUGaccgaguUGCCaGCGCUcGugGCCg -3' miRNA: 3'- uucaUGCGAC-------AUGG-CGCGAaCugCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 6668 | 0.67 | 0.650874 |
Target: 5'- ---gGCGCUGgGCgGCGCgccgUGGCGgCg -3' miRNA: 3'- uucaUGCGACaUGgCGCGa---ACUGCgG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 11809 | 0.67 | 0.66213 |
Target: 5'- cGGUGCcggucgGCUGccggacAUCGCGCagGACGCCa -3' miRNA: 3'- uUCAUG------CGACa-----UGGCGCGaaCUGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 40107 | 0.66 | 0.684544 |
Target: 5'- --uUGCGaggcGU-CCGCGCcgUGGCGCCg -3' miRNA: 3'- uucAUGCga--CAuGGCGCGa-ACUGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 1732 | 0.66 | 0.739443 |
Target: 5'- ---aGCGCUGUuuccgACCGCGCa--GCGCa -3' miRNA: 3'- uucaUGCGACA-----UGGCGCGaacUGCGg -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 33108 | 0.66 | 0.728641 |
Target: 5'- --cUACGCacGUGCgGCGCUcaaagcgaucGACGCCg -3' miRNA: 3'- uucAUGCGa-CAUGgCGCGAa---------CUGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 8947 | 0.66 | 0.728641 |
Target: 5'- aAGGUGCGCggcuaACCGCGCcgca-GCCg -3' miRNA: 3'- -UUCAUGCGaca--UGGCGCGaacugCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 16840 | 0.66 | 0.717738 |
Target: 5'- cGGUACGCcuUGCCGUGUc-GGCGCa -3' miRNA: 3'- uUCAUGCGacAUGGCGCGaaCUGCGg -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 48176 | 0.66 | 0.717738 |
Target: 5'- ---gGCGCgGUGCgCGCGCccggUUGcCGCCu -3' miRNA: 3'- uucaUGCGaCAUG-GCGCG----AACuGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 30699 | 0.66 | 0.706746 |
Target: 5'- ---cGCGCcuUGCCGCGCUgcugcacgaccUGGCGUCc -3' miRNA: 3'- uucaUGCGacAUGGCGCGA-----------ACUGCGG- -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 18542 | 0.66 | 0.706746 |
Target: 5'- cGGGUACGCcuccgGUGCCGgGUU--GCGCg -3' miRNA: 3'- -UUCAUGCGa----CAUGGCgCGAacUGCGg -5' |
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17134 | 3' | -54.2 | NC_004333.2 | + | 12381 | 0.66 | 0.695677 |
Target: 5'- ---cGCGCgagGcUGgCGCGCagGACGCCg -3' miRNA: 3'- uucaUGCGa--C-AUgGCGCGaaCUGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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