miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17134 5' -55.1 NC_004333.2 + 44634 0.66 0.712672
Target:  5'- --cGCGUCGGUGuCGAuCAGUgcgUACUUGUa -3'
miRNA:   3'- ucuUGCGGCCGC-GCU-GUCA---GUGAACG- -5'
17134 5' -55.1 NC_004333.2 + 33041 0.66 0.712672
Target:  5'- uGAGCGCCGcacGUGCGuaGCGGUCggccACgaGCg -3'
miRNA:   3'- uCUUGCGGC---CGCGC--UGUCAG----UGaaCG- -5'
17134 5' -55.1 NC_004333.2 + 21472 0.66 0.712672
Target:  5'- cGAAUGCCGGCcgauugccuauGCGAC--UCGCgaagUGUg -3'
miRNA:   3'- uCUUGCGGCCG-----------CGCUGucAGUGa---ACG- -5'
17134 5' -55.1 NC_004333.2 + 40834 0.66 0.712672
Target:  5'- cAGAACGUCgaagaGGCGCGcGCcuucuGGUCGCcgGCg -3'
miRNA:   3'- -UCUUGCGG-----CCGCGC-UG-----UCAGUGaaCG- -5'
17134 5' -55.1 NC_004333.2 + 2373 0.66 0.712672
Target:  5'- -cAACGCgGGCGUGccggccACGGUacacgACUUGCg -3'
miRNA:   3'- ucUUGCGgCCGCGC------UGUCAg----UGAACG- -5'
17134 5' -55.1 NC_004333.2 + 18598 0.66 0.712672
Target:  5'- cGGGuugcCGCCGGCuGCGAaGGcCGCU-GCa -3'
miRNA:   3'- -UCUu---GCGGCCG-CGCUgUCaGUGAaCG- -5'
17134 5' -55.1 NC_004333.2 + 2377 0.66 0.709421
Target:  5'- -cGACGCggcguagcccaugaCGGCGcCGGCGGUCGCcUGg -3'
miRNA:   3'- ucUUGCG--------------GCCGC-GCUGUCAGUGaACg -5'
17134 5' -55.1 NC_004333.2 + 30746 0.66 0.701809
Target:  5'- -cGGCGgCGGCGCGaACGGcuUCAUgaaggUGCu -3'
miRNA:   3'- ucUUGCgGCCGCGC-UGUC--AGUGa----ACG- -5'
17134 5' -55.1 NC_004333.2 + 24097 0.66 0.701809
Target:  5'- cGAGCGCaUGaGCGCGuugaucgacggACAGUCGCagcGCg -3'
miRNA:   3'- uCUUGCG-GC-CGCGC-----------UGUCAGUGaa-CG- -5'
17134 5' -55.1 NC_004333.2 + 37605 0.66 0.701809
Target:  5'- cGAAucguCGCCGGUGCuGCAugauGUCACgcGCg -3'
miRNA:   3'- uCUU----GCGGCCGCGcUGU----CAGUGaaCG- -5'
17134 5' -55.1 NC_004333.2 + 10730 0.66 0.701809
Target:  5'- ----gGCCGGCGCGACcgugacGUCACc--- -3'
miRNA:   3'- ucuugCGGCCGCGCUGu-----CAGUGaacg -5'
17134 5' -55.1 NC_004333.2 + 20846 0.66 0.695257
Target:  5'- uGGAGCGCaGGCGUGucgacguucaggcgcGCAGcCGCgucgGCg -3'
miRNA:   3'- -UCUUGCGgCCGCGC---------------UGUCaGUGaa--CG- -5'
17134 5' -55.1 NC_004333.2 + 47472 0.66 0.690876
Target:  5'- --cGCGCCGGCGgCGACuGcCGCg--- -3'
miRNA:   3'- ucuUGCGGCCGC-GCUGuCaGUGaacg -5'
17134 5' -55.1 NC_004333.2 + 28956 0.66 0.690876
Target:  5'- --uGCGCCGaGCGCGaucgcGCGG-CACgaGCg -3'
miRNA:   3'- ucuUGCGGC-CGCGC-----UGUCaGUGaaCG- -5'
17134 5' -55.1 NC_004333.2 + 19568 0.66 0.690876
Target:  5'- cGAGCGCCGccaGCGCGcCAG-CGCcgaucGCa -3'
miRNA:   3'- uCUUGCGGC---CGCGCuGUCaGUGaa---CG- -5'
17134 5' -55.1 NC_004333.2 + 7271 0.66 0.689779
Target:  5'- -aGACGCCGaucaucuGCGCGACGGcgaACggGCg -3'
miRNA:   3'- ucUUGCGGC-------CGCGCUGUCag-UGaaCG- -5'
17134 5' -55.1 NC_004333.2 + 26777 0.66 0.679885
Target:  5'- ----gGCCGGCGCGGCGGgCAUc--- -3'
miRNA:   3'- ucuugCGGCCGCGCUGUCaGUGaacg -5'
17134 5' -55.1 NC_004333.2 + 20579 0.66 0.679885
Target:  5'- cGGcGCGgCGGCGgcCGGCAG-CGgUUGCg -3'
miRNA:   3'- -UCuUGCgGCCGC--GCUGUCaGUgAACG- -5'
17134 5' -55.1 NC_004333.2 + 48182 0.66 0.668848
Target:  5'- --cAUGCCGGCGCGGugcgcgcgccCGGUUGCcgccUGCg -3'
miRNA:   3'- ucuUGCGGCCGCGCU----------GUCAGUGa---ACG- -5'
17134 5' -55.1 NC_004333.2 + 36162 0.66 0.668848
Target:  5'- -cGugGCUGGCGCGcaGCGccgcGUCACggGCc -3'
miRNA:   3'- ucUugCGGCCGCGC--UGU----CAGUGaaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.