miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17134 5' -55.1 NC_004333.2 + 19568 0.66 0.690876
Target:  5'- cGAGCGCCGccaGCGCGcCAG-CGCcgaucGCa -3'
miRNA:   3'- uCUUGCGGC---CGCGCuGUCaGUGaa---CG- -5'
17134 5' -55.1 NC_004333.2 + 28956 0.66 0.690876
Target:  5'- --uGCGCCGaGCGCGaucgcGCGG-CACgaGCg -3'
miRNA:   3'- ucuUGCGGC-CGCGC-----UGUCaGUGaaCG- -5'
17134 5' -55.1 NC_004333.2 + 26777 0.66 0.679885
Target:  5'- ----gGCCGGCGCGGCGGgCAUc--- -3'
miRNA:   3'- ucuugCGGCCGCGCUGUCaGUGaacg -5'
17134 5' -55.1 NC_004333.2 + 17546 0.66 0.668848
Target:  5'- cGAGCaGCgUGaGCGCGGCGGccuUCGCgUUGCg -3'
miRNA:   3'- uCUUG-CG-GC-CGCGCUGUC---AGUG-AACG- -5'
17134 5' -55.1 NC_004333.2 + 20579 0.66 0.679885
Target:  5'- cGGcGCGgCGGCGgcCGGCAG-CGgUUGCg -3'
miRNA:   3'- -UCuUGCgGCCGC--GCUGUCaGUgAACG- -5'
17134 5' -55.1 NC_004333.2 + 4671 0.67 0.602262
Target:  5'- cGAAacUGCCGGCGCGGCcGUuCAUggaaaagacgaUUGCc -3'
miRNA:   3'- uCUU--GCGGCCGCGCUGuCA-GUG-----------AACG- -5'
17134 5' -55.1 NC_004333.2 + 15285 0.67 0.642237
Target:  5'- --uGCGgCGGCGCGGuCAGcaucagcaccgggCGCUUGCc -3'
miRNA:   3'- ucuUGCgGCCGCGCU-GUCa------------GUGAACG- -5'
17134 5' -55.1 NC_004333.2 + 20565 0.67 0.635571
Target:  5'- uGAuCGUCGGCGCGuCGgGUCGCgccgUGg -3'
miRNA:   3'- uCUuGCGGCCGCGCuGU-CAGUGa---ACg -5'
17134 5' -55.1 NC_004333.2 + 17290 0.67 0.635571
Target:  5'- uGAACGCCGGC-CGGCGcagcGUC-CUcgacaUGCc -3'
miRNA:   3'- uCUUGCGGCCGcGCUGU----CAGuGA-----ACG- -5'
17134 5' -55.1 NC_004333.2 + 2002 0.67 0.597833
Target:  5'- --uACGCCGGCGCGGaugaugcccgacGUCACggccGCa -3'
miRNA:   3'- ucuUGCGGCCGCGCUgu----------CAGUGaa--CG- -5'
17134 5' -55.1 NC_004333.2 + 8214 0.67 0.613351
Target:  5'- uGAACGCU-GCGCGGCAGgaugaCGCcgGCc -3'
miRNA:   3'- uCUUGCGGcCGCGCUGUCa----GUGaaCG- -5'
17134 5' -55.1 NC_004333.2 + 41648 0.67 0.624458
Target:  5'- cGGGCGCgGGCuGCGGCcGUaCGCcgGCa -3'
miRNA:   3'- uCUUGCGgCCG-CGCUGuCA-GUGaaCG- -5'
17134 5' -55.1 NC_004333.2 + 42084 0.67 0.602262
Target:  5'- aGGAuaGCGUCGugcuGCGCGACGaggcguGUCGCgaggUGCg -3'
miRNA:   3'- -UCU--UGCGGC----CGCGCUGU------CAGUGa---ACG- -5'
17134 5' -55.1 NC_004333.2 + 13942 0.67 0.64668
Target:  5'- cGAcuuCGCgCGGCGCGGCg--CGCUcaaUGCg -3'
miRNA:   3'- uCUu--GCG-GCCGCGCUGucaGUGA---ACG- -5'
17134 5' -55.1 NC_004333.2 + 27612 0.67 0.635571
Target:  5'- cAGAuucGCcCCGGCGCGGC----ACUUGCg -3'
miRNA:   3'- -UCU---UGcGGCCGCGCUGucagUGAACG- -5'
17134 5' -55.1 NC_004333.2 + 2458 0.67 0.635571
Target:  5'- cGAcCGCCGGCGCc---GUCAUggGCu -3'
miRNA:   3'- uCUuGCGGCCGCGcuguCAGUGaaCG- -5'
17134 5' -55.1 NC_004333.2 + 11816 0.67 0.635571
Target:  5'- uGAACGUCGGUGC--CGGUCGgcUGCc -3'
miRNA:   3'- uCUUGCGGCCGCGcuGUCAGUgaACG- -5'
17134 5' -55.1 NC_004333.2 + 38774 0.67 0.635571
Target:  5'- cGAGCGCCGGCGgCuGCGGgaauuucagCGCggcgGCc -3'
miRNA:   3'- uCUUGCGGCCGC-GcUGUCa--------GUGaa--CG- -5'
17134 5' -55.1 NC_004333.2 + 42226 0.67 0.613351
Target:  5'- gAGGACGCUguugcccucgGGCGUGAgcGUCAUgucgUGCa -3'
miRNA:   3'- -UCUUGCGG----------CCGCGCUguCAGUGa---ACG- -5'
17134 5' -55.1 NC_004333.2 + 29117 0.67 0.602262
Target:  5'- uGGAUaGCCGGCG-GACGGUCA---GCa -3'
miRNA:   3'- uCUUG-CGGCCGCgCUGUCAGUgaaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.