miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17134 5' -55.1 NC_004333.2 + 10882 1.12 0.000514
Target:  5'- aAGAACGCCGGCGCGACAGUCACUUGCg -3'
miRNA:   3'- -UCUUGCGGCCGCGCUGUCAGUGAACG- -5'
17134 5' -55.1 NC_004333.2 + 28315 0.8 0.099433
Target:  5'- aGGAGCGCCGcGCGCGcgucACGGUCACgugacGCg -3'
miRNA:   3'- -UCUUGCGGC-CGCGC----UGUCAGUGaa---CG- -5'
17134 5' -55.1 NC_004333.2 + 18598 0.78 0.139716
Target:  5'- -aAACGaCCGGCGCGGCAGgCGCggGCg -3'
miRNA:   3'- ucUUGC-GGCCGCGCUGUCaGUGaaCG- -5'
17134 5' -55.1 NC_004333.2 + 9006 0.75 0.216532
Target:  5'- uGGAcaGCGCCGGCGCGAacgaAGcCGCgucGCg -3'
miRNA:   3'- -UCU--UGCGGCCGCGCUg---UCaGUGaa-CG- -5'
17134 5' -55.1 NC_004333.2 + 31226 0.74 0.267094
Target:  5'- --cAUGCCGGuCGCGACGGcCGCgcgGCg -3'
miRNA:   3'- ucuUGCGGCC-GCGCUGUCaGUGaa-CG- -5'
17134 5' -55.1 NC_004333.2 + 38388 0.73 0.288383
Target:  5'- gGGuGCGCCGGCGUGACgccggccacGGUCAagacgGCg -3'
miRNA:   3'- -UCuUGCGGCCGCGCUG---------UCAGUgaa--CG- -5'
17134 5' -55.1 NC_004333.2 + 25420 0.73 0.303303
Target:  5'- cAGcgUGCCGGCgGCGGCcGUCACgccggGCg -3'
miRNA:   3'- -UCuuGCGGCCG-CGCUGuCAGUGaa---CG- -5'
17134 5' -55.1 NC_004333.2 + 15487 0.72 0.326784
Target:  5'- cGAGCGCaacaGGgcugcuCGCGGCGGUCACcgGCg -3'
miRNA:   3'- uCUUGCGg---CC------GCGCUGUCAGUGaaCG- -5'
17134 5' -55.1 NC_004333.2 + 28487 0.72 0.334905
Target:  5'- -cGACaCCGGCGCGACAcGUUGCgaUUGCg -3'
miRNA:   3'- ucUUGcGGCCGCGCUGU-CAGUG--AACG- -5'
17134 5' -55.1 NC_004333.2 + 6746 0.72 0.360144
Target:  5'- cGAGCGCCacGGCGCccCGGUCGCgcGCc -3'
miRNA:   3'- uCUUGCGG--CCGCGcuGUCAGUGaaCG- -5'
17134 5' -55.1 NC_004333.2 + 47495 0.72 0.360144
Target:  5'- uGAACgaggcgccgGCCGGCGCGAcCAGUaCAUUgaaUGCa -3'
miRNA:   3'- uCUUG---------CGGCCGCGCU-GUCA-GUGA---ACG- -5'
17134 5' -55.1 NC_004333.2 + 47555 0.72 0.360144
Target:  5'- -cGGCGCCucguucaGCGCGGCAGUCGCcgccgGCg -3'
miRNA:   3'- ucUUGCGGc------CGCGCUGUCAGUGaa---CG- -5'
17134 5' -55.1 NC_004333.2 + 19552 0.72 0.360144
Target:  5'- uGGGCGCCGGuCGC-ACGGUCgGCgcgGCa -3'
miRNA:   3'- uCUUGCGGCC-GCGcUGUCAG-UGaa-CG- -5'
17134 5' -55.1 NC_004333.2 + 25503 0.72 0.368847
Target:  5'- cGGcACGcCCGGCGUGACGGcCGCcgccgGCa -3'
miRNA:   3'- -UCuUGC-GGCCGCGCUGUCaGUGaa---CG- -5'
17134 5' -55.1 NC_004333.2 + 32227 0.71 0.386681
Target:  5'- -cGugGCCGGCcugcCGACAGUCGCc-GCg -3'
miRNA:   3'- ucUugCGGCCGc---GCUGUCAGUGaaCG- -5'
17134 5' -55.1 NC_004333.2 + 29972 0.71 0.395809
Target:  5'- gAGGAUGCCGcGCGCGGCccgaUCGCgcaGCg -3'
miRNA:   3'- -UCUUGCGGC-CGCGCUGuc--AGUGaa-CG- -5'
17134 5' -55.1 NC_004333.2 + 25311 0.71 0.413529
Target:  5'- -cGACGCCGGCgacugccGCGACguacguaacGGUCGCgUUGCc -3'
miRNA:   3'- ucUUGCGGCCG-------CGCUG---------UCAGUG-AACG- -5'
17134 5' -55.1 NC_004333.2 + 22002 0.71 0.414475
Target:  5'- --uGCGUCGGCGCGAauCAGcgCGCggGCg -3'
miRNA:   3'- ucuUGCGGCCGCGCU--GUCa-GUGaaCG- -5'
17134 5' -55.1 NC_004333.2 + 9602 0.7 0.424009
Target:  5'- ----aGCCGGCGCGGCAucgGcCGgUUGCg -3'
miRNA:   3'- ucuugCGGCCGCGCUGU---CaGUgAACG- -5'
17134 5' -55.1 NC_004333.2 + 38372 0.7 0.424009
Target:  5'- cGGuCGCCGcGUGC-ACGGUCGCgcgUGCa -3'
miRNA:   3'- uCUuGCGGC-CGCGcUGUCAGUGa--ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.