miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17134 5' -55.1 NC_004333.2 + 30504 0.7 0.433672
Target:  5'- -aGACG-UGGCGCGagGCAGUCGCUacgGCg -3'
miRNA:   3'- ucUUGCgGCCGCGC--UGUCAGUGAa--CG- -5'
17134 5' -55.1 NC_004333.2 + 37520 0.7 0.443463
Target:  5'- cGGAAUGUCGGCGCcGuucgucacgccGCAGUaCACgUGCa -3'
miRNA:   3'- -UCUUGCGGCCGCG-C-----------UGUCA-GUGaACG- -5'
17134 5' -55.1 NC_004333.2 + 32090 0.7 0.443463
Target:  5'- uAGAucgGCGUCGGCGCGuuCAGUgACg-GCa -3'
miRNA:   3'- -UCU---UGCGGCCGCGCu-GUCAgUGaaCG- -5'
17134 5' -55.1 NC_004333.2 + 31311 0.7 0.45238
Target:  5'- gAGAcggcgcuGCGCC-GCGCGGCcGUCGCgccgGCa -3'
miRNA:   3'- -UCU-------UGCGGcCGCGCUGuCAGUGaa--CG- -5'
17134 5' -55.1 NC_004333.2 + 21247 0.7 0.453377
Target:  5'- cGAGCagGCCGGCcuGCGGCAG-CGCgaaGCg -3'
miRNA:   3'- uCUUG--CGGCCG--CGCUGUCaGUGaa-CG- -5'
17134 5' -55.1 NC_004333.2 + 33486 0.7 0.463409
Target:  5'- --uACGguUCGGCGCG-CAGUCGCU-GCg -3'
miRNA:   3'- ucuUGC--GGCCGCGCuGUCAGUGAaCG- -5'
17134 5' -55.1 NC_004333.2 + 27379 0.7 0.473558
Target:  5'- uGGAAgUGcCCGGCGCGACGgccgugccGUCAUguUUGCc -3'
miRNA:   3'- -UCUU-GC-GGCCGCGCUGU--------CAGUG--AACG- -5'
17134 5' -55.1 NC_004333.2 + 10975 0.69 0.483816
Target:  5'- gAGAACGCacugucguCGGCGCaaguGACuGUCGCgccgGCg -3'
miRNA:   3'- -UCUUGCG--------GCCGCG----CUGuCAGUGaa--CG- -5'
17134 5' -55.1 NC_004333.2 + 160 0.69 0.49418
Target:  5'- cGGGCaCCGGCG-GGCAGgCACUcUGCg -3'
miRNA:   3'- uCUUGcGGCCGCgCUGUCaGUGA-ACG- -5'
17134 5' -55.1 NC_004333.2 + 25747 0.69 0.49418
Target:  5'- ----gGUCGGCGUGAaGGUCGgUUGCg -3'
miRNA:   3'- ucuugCGGCCGCGCUgUCAGUgAACG- -5'
17134 5' -55.1 NC_004333.2 + 39118 0.69 0.504644
Target:  5'- -cGACGCUGacauGCGCGACGGcaUCgGCUUGCc -3'
miRNA:   3'- ucUUGCGGC----CGCGCUGUC--AG-UGAACG- -5'
17134 5' -55.1 NC_004333.2 + 18834 0.69 0.515203
Target:  5'- cGAA-GCCcGCGCGGCAGUaCGCagUUGCc -3'
miRNA:   3'- uCUUgCGGcCGCGCUGUCA-GUG--AACG- -5'
17134 5' -55.1 NC_004333.2 + 38303 0.69 0.515203
Target:  5'- -uGACGaaCGGCGCGGCg--CGCUUGCu -3'
miRNA:   3'- ucUUGCg-GCCGCGCUGucaGUGAACG- -5'
17134 5' -55.1 NC_004333.2 + 19942 0.69 0.515203
Target:  5'- uGAGCGCgGGCGUaauCGGUCGCacucGCg -3'
miRNA:   3'- uCUUGCGgCCGCGcu-GUCAGUGaa--CG- -5'
17134 5' -55.1 NC_004333.2 + 2749 0.69 0.515203
Target:  5'- ---cCGCCGGCGCGACGcugcaaGCUgccgGCg -3'
miRNA:   3'- ucuuGCGGCCGCGCUGUcag---UGAa---CG- -5'
17134 5' -55.1 NC_004333.2 + 27312 0.69 0.515203
Target:  5'- -aGGCGUCGGCGCaGGCAGacgcucgaUCACgacgGCg -3'
miRNA:   3'- ucUUGCGGCCGCG-CUGUC--------AGUGaa--CG- -5'
17134 5' -55.1 NC_004333.2 + 4106 0.69 0.515203
Target:  5'- ----aGCgGGCGCGACAGaUCAUcgaauUUGCc -3'
miRNA:   3'- ucuugCGgCCGCGCUGUC-AGUG-----AACG- -5'
17134 5' -55.1 NC_004333.2 + 19496 0.69 0.52585
Target:  5'- -cGGCGCUGGCGCGcugGCGG-CGCUcGUg -3'
miRNA:   3'- ucUUGCGGCCGCGC---UGUCaGUGAaCG- -5'
17134 5' -55.1 NC_004333.2 + 28759 0.68 0.536578
Target:  5'- cGAGCGCC-GCGuCGACcgcgcgGGUCGCggcgGCg -3'
miRNA:   3'- uCUUGCGGcCGC-GCUG------UCAGUGaa--CG- -5'
17134 5' -55.1 NC_004333.2 + 27823 0.68 0.536578
Target:  5'- cGAAgccaGCCGGCGUG-CAGaUCGCUUucaGCa -3'
miRNA:   3'- uCUUg---CGGCCGCGCuGUC-AGUGAA---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.