Results 1 - 20 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17134 | 5' | -55.1 | NC_004333.2 | + | 44634 | 0.66 | 0.712672 |
Target: 5'- --cGCGUCGGUGuCGAuCAGUgcgUACUUGUa -3' miRNA: 3'- ucuUGCGGCCGC-GCU-GUCA---GUGAACG- -5' |
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17134 | 5' | -55.1 | NC_004333.2 | + | 33041 | 0.66 | 0.712672 |
Target: 5'- uGAGCGCCGcacGUGCGuaGCGGUCggccACgaGCg -3' miRNA: 3'- uCUUGCGGC---CGCGC--UGUCAG----UGaaCG- -5' |
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17134 | 5' | -55.1 | NC_004333.2 | + | 21472 | 0.66 | 0.712672 |
Target: 5'- cGAAUGCCGGCcgauugccuauGCGAC--UCGCgaagUGUg -3' miRNA: 3'- uCUUGCGGCCG-----------CGCUGucAGUGa---ACG- -5' |
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17134 | 5' | -55.1 | NC_004333.2 | + | 40834 | 0.66 | 0.712672 |
Target: 5'- cAGAACGUCgaagaGGCGCGcGCcuucuGGUCGCcgGCg -3' miRNA: 3'- -UCUUGCGG-----CCGCGC-UG-----UCAGUGaaCG- -5' |
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17134 | 5' | -55.1 | NC_004333.2 | + | 2373 | 0.66 | 0.712672 |
Target: 5'- -cAACGCgGGCGUGccggccACGGUacacgACUUGCg -3' miRNA: 3'- ucUUGCGgCCGCGC------UGUCAg----UGAACG- -5' |
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17134 | 5' | -55.1 | NC_004333.2 | + | 18598 | 0.66 | 0.712672 |
Target: 5'- cGGGuugcCGCCGGCuGCGAaGGcCGCU-GCa -3' miRNA: 3'- -UCUu---GCGGCCG-CGCUgUCaGUGAaCG- -5' |
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17134 | 5' | -55.1 | NC_004333.2 | + | 2377 | 0.66 | 0.709421 |
Target: 5'- -cGACGCggcguagcccaugaCGGCGcCGGCGGUCGCcUGg -3' miRNA: 3'- ucUUGCG--------------GCCGC-GCUGUCAGUGaACg -5' |
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17134 | 5' | -55.1 | NC_004333.2 | + | 30746 | 0.66 | 0.701809 |
Target: 5'- -cGGCGgCGGCGCGaACGGcuUCAUgaaggUGCu -3' miRNA: 3'- ucUUGCgGCCGCGC-UGUC--AGUGa----ACG- -5' |
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17134 | 5' | -55.1 | NC_004333.2 | + | 24097 | 0.66 | 0.701809 |
Target: 5'- cGAGCGCaUGaGCGCGuugaucgacggACAGUCGCagcGCg -3' miRNA: 3'- uCUUGCG-GC-CGCGC-----------UGUCAGUGaa-CG- -5' |
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17134 | 5' | -55.1 | NC_004333.2 | + | 37605 | 0.66 | 0.701809 |
Target: 5'- cGAAucguCGCCGGUGCuGCAugauGUCACgcGCg -3' miRNA: 3'- uCUU----GCGGCCGCGcUGU----CAGUGaaCG- -5' |
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17134 | 5' | -55.1 | NC_004333.2 | + | 10730 | 0.66 | 0.701809 |
Target: 5'- ----gGCCGGCGCGACcgugacGUCACc--- -3' miRNA: 3'- ucuugCGGCCGCGCUGu-----CAGUGaacg -5' |
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17134 | 5' | -55.1 | NC_004333.2 | + | 20846 | 0.66 | 0.695257 |
Target: 5'- uGGAGCGCaGGCGUGucgacguucaggcgcGCAGcCGCgucgGCg -3' miRNA: 3'- -UCUUGCGgCCGCGC---------------UGUCaGUGaa--CG- -5' |
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17134 | 5' | -55.1 | NC_004333.2 | + | 47472 | 0.66 | 0.690876 |
Target: 5'- --cGCGCCGGCGgCGACuGcCGCg--- -3' miRNA: 3'- ucuUGCGGCCGC-GCUGuCaGUGaacg -5' |
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17134 | 5' | -55.1 | NC_004333.2 | + | 28956 | 0.66 | 0.690876 |
Target: 5'- --uGCGCCGaGCGCGaucgcGCGG-CACgaGCg -3' miRNA: 3'- ucuUGCGGC-CGCGC-----UGUCaGUGaaCG- -5' |
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17134 | 5' | -55.1 | NC_004333.2 | + | 19568 | 0.66 | 0.690876 |
Target: 5'- cGAGCGCCGccaGCGCGcCAG-CGCcgaucGCa -3' miRNA: 3'- uCUUGCGGC---CGCGCuGUCaGUGaa---CG- -5' |
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17134 | 5' | -55.1 | NC_004333.2 | + | 7271 | 0.66 | 0.689779 |
Target: 5'- -aGACGCCGaucaucuGCGCGACGGcgaACggGCg -3' miRNA: 3'- ucUUGCGGC-------CGCGCUGUCag-UGaaCG- -5' |
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17134 | 5' | -55.1 | NC_004333.2 | + | 26777 | 0.66 | 0.679885 |
Target: 5'- ----gGCCGGCGCGGCGGgCAUc--- -3' miRNA: 3'- ucuugCGGCCGCGCUGUCaGUGaacg -5' |
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17134 | 5' | -55.1 | NC_004333.2 | + | 20579 | 0.66 | 0.679885 |
Target: 5'- cGGcGCGgCGGCGgcCGGCAG-CGgUUGCg -3' miRNA: 3'- -UCuUGCgGCCGC--GCUGUCaGUgAACG- -5' |
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17134 | 5' | -55.1 | NC_004333.2 | + | 48182 | 0.66 | 0.668848 |
Target: 5'- --cAUGCCGGCGCGGugcgcgcgccCGGUUGCcgccUGCg -3' miRNA: 3'- ucuUGCGGCCGCGCU----------GUCAGUGa---ACG- -5' |
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17134 | 5' | -55.1 | NC_004333.2 | + | 36162 | 0.66 | 0.668848 |
Target: 5'- -cGugGCUGGCGCGcaGCGccgcGUCACggGCc -3' miRNA: 3'- ucUugCGGCCGCGC--UGU----CAGUGaaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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