miRNA display CGI


Results 41 - 60 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17134 5' -55.1 NC_004333.2 + 40897 0.68 0.580171
Target:  5'- --uGCGCCGGCuuGCGcaugaaAGUCGCaUGCa -3'
miRNA:   3'- ucuUGCGGCCG--CGCug----UCAGUGaACG- -5'
17134 5' -55.1 NC_004333.2 + 26727 0.68 0.580171
Target:  5'- -cGGCaGCCGGCGCGAuCAcGcUCACgaGCg -3'
miRNA:   3'- ucUUG-CGGCCGCGCU-GU-C-AGUGaaCG- -5'
17134 5' -55.1 NC_004333.2 + 36203 0.68 0.580171
Target:  5'- aAGGuuGCGCCGGuCGCGcagGCcGUCGCcaaccUUGCg -3'
miRNA:   3'- -UCU--UGCGGCC-GCGC---UGuCAGUG-----AACG- -5'
17134 5' -55.1 NC_004333.2 + 17361 0.68 0.580171
Target:  5'- aGGAcgcuGCGCCGGC-CGGCGuUCACgucgaagGCa -3'
miRNA:   3'- -UCU----UGCGGCCGcGCUGUcAGUGaa-----CG- -5'
17134 5' -55.1 NC_004333.2 + 10922 0.68 0.580171
Target:  5'- -cGGCGUCaagcGCGUGACAGcgUACUUGCg -3'
miRNA:   3'- ucUUGCGGc---CGCGCUGUCa-GUGAACG- -5'
17134 5' -55.1 NC_004333.2 + 26912 0.68 0.580171
Target:  5'- cGAGCG-CGaCGCGACAG-CACUcGCu -3'
miRNA:   3'- uCUUGCgGCcGCGCUGUCaGUGAaCG- -5'
17134 5' -55.1 NC_004333.2 + 31363 0.68 0.57907
Target:  5'- -cGGCGCaGGUGCGGcCGGUCucgccggcaugguGCUUGCa -3'
miRNA:   3'- ucUUGCGgCCGCGCU-GUCAG-------------UGAACG- -5'
17134 5' -55.1 NC_004333.2 + 46926 0.68 0.569186
Target:  5'- cGAGCGCaCGGCGuCGAUgAGcaGCUUGUg -3'
miRNA:   3'- uCUUGCG-GCCGC-GCUG-UCagUGAACG- -5'
17134 5' -55.1 NC_004333.2 + 5541 0.68 0.569186
Target:  5'- -cGugGCCGGCGaCGGCuuggCGCgagUGCa -3'
miRNA:   3'- ucUugCGGCCGC-GCUGuca-GUGa--ACG- -5'
17134 5' -55.1 NC_004333.2 + 44864 0.68 0.569186
Target:  5'- aAGAuCGCCGcGCGCGACAaccugcccgacUCGCU-GCg -3'
miRNA:   3'- -UCUuGCGGC-CGCGCUGUc----------AGUGAaCG- -5'
17134 5' -55.1 NC_004333.2 + 8643 0.68 0.558254
Target:  5'- cGAGC-UCGGCGCGGCGcccgGCUUGCu -3'
miRNA:   3'- uCUUGcGGCCGCGCUGUcag-UGAACG- -5'
17134 5' -55.1 NC_004333.2 + 6603 0.68 0.558254
Target:  5'- cGGcGCGCCGcccaGCGCcGCAGUCGCagGUa -3'
miRNA:   3'- -UCuUGCGGC----CGCGcUGUCAGUGaaCG- -5'
17134 5' -55.1 NC_004333.2 + 5062 0.68 0.547383
Target:  5'- -cGACGUCGGCGCGGCGcugaacagcGUCAgcaggugUGCg -3'
miRNA:   3'- ucUUGCGGCCGCGCUGU---------CAGUga-----ACG- -5'
17134 5' -55.1 NC_004333.2 + 47498 0.68 0.547383
Target:  5'- cGGAuugGCGCCGGCgaGCGGCGauguagcugcGaUUGCUUGCg -3'
miRNA:   3'- -UCU---UGCGGCCG--CGCUGU----------C-AGUGAACG- -5'
17134 5' -55.1 NC_004333.2 + 37800 0.68 0.547383
Target:  5'- --cGCGCaGGCGCGGCA---GCUUGCc -3'
miRNA:   3'- ucuUGCGgCCGCGCUGUcagUGAACG- -5'
17134 5' -55.1 NC_004333.2 + 13758 0.68 0.547383
Target:  5'- uAGGACGCCGcgcgccgcucGCGCGGCGugUAgUUGCu -3'
miRNA:   3'- -UCUUGCGGC----------CGCGCUGUcaGUgAACG- -5'
17134 5' -55.1 NC_004333.2 + 44519 0.68 0.546299
Target:  5'- uGGACGCCGGC-CGAUcaccccgAG-CACUUcGCg -3'
miRNA:   3'- uCUUGCGGCCGcGCUG-------UCaGUGAA-CG- -5'
17134 5' -55.1 NC_004333.2 + 27823 0.68 0.536578
Target:  5'- cGAAgccaGCCGGCGUG-CAGaUCGCUUucaGCa -3'
miRNA:   3'- uCUUg---CGGCCGCGCuGUC-AGUGAA---CG- -5'
17134 5' -55.1 NC_004333.2 + 28759 0.68 0.536578
Target:  5'- cGAGCGCC-GCGuCGACcgcgcgGGUCGCggcgGCg -3'
miRNA:   3'- uCUUGCGGcCGC-GCUG------UCAGUGaa--CG- -5'
17134 5' -55.1 NC_004333.2 + 19496 0.69 0.52585
Target:  5'- -cGGCGCUGGCGCGcugGCGG-CGCUcGUg -3'
miRNA:   3'- ucUUGCGGCCGCGC---UGUCaGUGAaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.