miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17134 5' -55.1 NC_004333.2 + 160 0.69 0.49418
Target:  5'- cGGGCaCCGGCG-GGCAGgCACUcUGCg -3'
miRNA:   3'- uCUUGcGGCCGCgCUGUCaGUGA-ACG- -5'
17134 5' -55.1 NC_004333.2 + 2002 0.67 0.597833
Target:  5'- --uACGCCGGCGCGGaugaugcccgacGUCACggccGCa -3'
miRNA:   3'- ucuUGCGGCCGCGCUgu----------CAGUGaa--CG- -5'
17134 5' -55.1 NC_004333.2 + 2373 0.66 0.712672
Target:  5'- -cAACGCgGGCGUGccggccACGGUacacgACUUGCg -3'
miRNA:   3'- ucUUGCGgCCGCGC------UGUCAg----UGAACG- -5'
17134 5' -55.1 NC_004333.2 + 2377 0.66 0.709421
Target:  5'- -cGACGCggcguagcccaugaCGGCGcCGGCGGUCGCcUGg -3'
miRNA:   3'- ucUUGCG--------------GCCGC-GCUGUCAGUGaACg -5'
17134 5' -55.1 NC_004333.2 + 2458 0.67 0.635571
Target:  5'- cGAcCGCCGGCGCc---GUCAUggGCu -3'
miRNA:   3'- uCUuGCGGCCGCGcuguCAGUGaaCG- -5'
17134 5' -55.1 NC_004333.2 + 2749 0.69 0.515203
Target:  5'- ---cCGCCGGCGCGACGcugcaaGCUgccgGCg -3'
miRNA:   3'- ucuuGCGGCCGCGCUGUcag---UGAa---CG- -5'
17134 5' -55.1 NC_004333.2 + 4106 0.69 0.515203
Target:  5'- ----aGCgGGCGCGACAGaUCAUcgaauUUGCc -3'
miRNA:   3'- ucuugCGgCCGCGCUGUC-AGUG-----AACG- -5'
17134 5' -55.1 NC_004333.2 + 4671 0.67 0.602262
Target:  5'- cGAAacUGCCGGCGCGGCcGUuCAUggaaaagacgaUUGCc -3'
miRNA:   3'- uCUU--GCGGCCGCGCUGuCA-GUG-----------AACG- -5'
17134 5' -55.1 NC_004333.2 + 5062 0.68 0.547383
Target:  5'- -cGACGUCGGCGCGGCGcugaacagcGUCAgcaggugUGCg -3'
miRNA:   3'- ucUUGCGGCCGCGCUGU---------CAGUga-----ACG- -5'
17134 5' -55.1 NC_004333.2 + 5541 0.68 0.569186
Target:  5'- -cGugGCCGGCGaCGGCuuggCGCgagUGCa -3'
miRNA:   3'- ucUugCGGCCGC-GCUGuca-GUGa--ACG- -5'
17134 5' -55.1 NC_004333.2 + 6603 0.68 0.558254
Target:  5'- cGGcGCGCCGcccaGCGCcGCAGUCGCagGUa -3'
miRNA:   3'- -UCuUGCGGC----CGCGcUGUCAGUGaaCG- -5'
17134 5' -55.1 NC_004333.2 + 6746 0.72 0.360144
Target:  5'- cGAGCGCCacGGCGCccCGGUCGCgcGCc -3'
miRNA:   3'- uCUUGCGG--CCGCGcuGUCAGUGaaCG- -5'
17134 5' -55.1 NC_004333.2 + 7271 0.66 0.689779
Target:  5'- -aGACGCCGaucaucuGCGCGACGGcgaACggGCg -3'
miRNA:   3'- ucUUGCGGC-------CGCGCUGUCag-UGaaCG- -5'
17134 5' -55.1 NC_004333.2 + 8214 0.67 0.613351
Target:  5'- uGAACGCU-GCGCGGCAGgaugaCGCcgGCc -3'
miRNA:   3'- uCUUGCGGcCGCGCUGUCa----GUGaaCG- -5'
17134 5' -55.1 NC_004333.2 + 8643 0.68 0.558254
Target:  5'- cGAGC-UCGGCGCGGCGcccgGCUUGCu -3'
miRNA:   3'- uCUUGcGGCCGCGCUGUcag-UGAACG- -5'
17134 5' -55.1 NC_004333.2 + 9006 0.75 0.216532
Target:  5'- uGGAcaGCGCCGGCGCGAacgaAGcCGCgucGCg -3'
miRNA:   3'- -UCU--UGCGGCCGCGCUg---UCaGUGaa-CG- -5'
17134 5' -55.1 NC_004333.2 + 9602 0.7 0.424009
Target:  5'- ----aGCCGGCGCGGCAucgGcCGgUUGCg -3'
miRNA:   3'- ucuugCGGCCGCGCUGU---CaGUgAACG- -5'
17134 5' -55.1 NC_004333.2 + 10730 0.66 0.701809
Target:  5'- ----gGCCGGCGCGACcgugacGUCACc--- -3'
miRNA:   3'- ucuugCGGCCGCGCUGu-----CAGUGaacg -5'
17134 5' -55.1 NC_004333.2 + 10882 1.12 0.000514
Target:  5'- aAGAACGCCGGCGCGACAGUCACUUGCg -3'
miRNA:   3'- -UCUUGCGGCCGCGCUGUCAGUGAACG- -5'
17134 5' -55.1 NC_004333.2 + 10922 0.68 0.580171
Target:  5'- -cGGCGUCaagcGCGUGACAGcgUACUUGCg -3'
miRNA:   3'- ucUUGCGGc---CGCGCUGUCa-GUGAACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.