miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17134 5' -55.1 NC_004333.2 + 10975 0.69 0.483816
Target:  5'- gAGAACGCacugucguCGGCGCaaguGACuGUCGCgccgGCg -3'
miRNA:   3'- -UCUUGCG--------GCCGCG----CUGuCAGUGaa--CG- -5'
17134 5' -55.1 NC_004333.2 + 11816 0.67 0.635571
Target:  5'- uGAACGUCGGUGC--CGGUCGgcUGCc -3'
miRNA:   3'- uCUUGCGGCCGCGcuGUCAGUgaACG- -5'
17134 5' -55.1 NC_004333.2 + 13758 0.68 0.547383
Target:  5'- uAGGACGCCGcgcgccgcucGCGCGGCGugUAgUUGCu -3'
miRNA:   3'- -UCUUGCGGC----------CGCGCUGUcaGUgAACG- -5'
17134 5' -55.1 NC_004333.2 + 13942 0.67 0.64668
Target:  5'- cGAcuuCGCgCGGCGCGGCg--CGCUcaaUGCg -3'
miRNA:   3'- uCUu--GCG-GCCGCGCUGucaGUGA---ACG- -5'
17134 5' -55.1 NC_004333.2 + 15077 0.66 0.657777
Target:  5'- -cGGCGUCGGCGuCGGCGGccCGCUaaccgGCu -3'
miRNA:   3'- ucUUGCGGCCGC-GCUGUCa-GUGAa----CG- -5'
17134 5' -55.1 NC_004333.2 + 15285 0.67 0.642237
Target:  5'- --uGCGgCGGCGCGGuCAGcaucagcaccgggCGCUUGCc -3'
miRNA:   3'- ucuUGCgGCCGCGCU-GUCa------------GUGAACG- -5'
17134 5' -55.1 NC_004333.2 + 15487 0.72 0.326784
Target:  5'- cGAGCGCaacaGGgcugcuCGCGGCGGUCACcgGCg -3'
miRNA:   3'- uCUUGCGg---CC------GCGCUGUCAGUGaaCG- -5'
17134 5' -55.1 NC_004333.2 + 17290 0.67 0.635571
Target:  5'- uGAACGCCGGC-CGGCGcagcGUC-CUcgacaUGCc -3'
miRNA:   3'- uCUUGCGGCCGcGCUGU----CAGuGA-----ACG- -5'
17134 5' -55.1 NC_004333.2 + 17361 0.68 0.580171
Target:  5'- aGGAcgcuGCGCCGGC-CGGCGuUCACgucgaagGCa -3'
miRNA:   3'- -UCU----UGCGGCCGcGCUGUcAGUGaa-----CG- -5'
17134 5' -55.1 NC_004333.2 + 17546 0.66 0.668848
Target:  5'- cGAGCaGCgUGaGCGCGGCGGccuUCGCgUUGCg -3'
miRNA:   3'- uCUUG-CG-GC-CGCGCUGUC---AGUG-AACG- -5'
17134 5' -55.1 NC_004333.2 + 18172 0.66 0.657777
Target:  5'- cGAuUGCCGGCGUGcCGGgugaugCGCUcgucgUGCg -3'
miRNA:   3'- uCUuGCGGCCGCGCuGUCa-----GUGA-----ACG- -5'
17134 5' -55.1 NC_004333.2 + 18598 0.78 0.139716
Target:  5'- -aAACGaCCGGCGCGGCAGgCGCggGCg -3'
miRNA:   3'- ucUUGC-GGCCGCGCUGUCaGUGaaCG- -5'
17134 5' -55.1 NC_004333.2 + 18598 0.66 0.712672
Target:  5'- cGGGuugcCGCCGGCuGCGAaGGcCGCU-GCa -3'
miRNA:   3'- -UCUu---GCGGCCG-CGCUgUCaGUGAaCG- -5'
17134 5' -55.1 NC_004333.2 + 18834 0.69 0.515203
Target:  5'- cGAA-GCCcGCGCGGCAGUaCGCagUUGCc -3'
miRNA:   3'- uCUUgCGGcCGCGCUGUCA-GUG--AACG- -5'
17134 5' -55.1 NC_004333.2 + 19496 0.69 0.52585
Target:  5'- -cGGCGCUGGCGCGcugGCGG-CGCUcGUg -3'
miRNA:   3'- ucUUGCGGCCGCGC---UGUCaGUGAaCG- -5'
17134 5' -55.1 NC_004333.2 + 19552 0.72 0.360144
Target:  5'- uGGGCGCCGGuCGC-ACGGUCgGCgcgGCa -3'
miRNA:   3'- uCUUGCGGCC-GCGcUGUCAG-UGaa-CG- -5'
17134 5' -55.1 NC_004333.2 + 19568 0.66 0.690876
Target:  5'- cGAGCGCCGccaGCGCGcCAG-CGCcgaucGCa -3'
miRNA:   3'- uCUUGCGGC---CGCGCuGUCaGUGaa---CG- -5'
17134 5' -55.1 NC_004333.2 + 19942 0.69 0.515203
Target:  5'- uGAGCGCgGGCGUaauCGGUCGCacucGCg -3'
miRNA:   3'- uCUUGCGgCCGCGcu-GUCAGUGaa--CG- -5'
17134 5' -55.1 NC_004333.2 + 20565 0.67 0.635571
Target:  5'- uGAuCGUCGGCGCGuCGgGUCGCgccgUGg -3'
miRNA:   3'- uCUuGCGGCCGCGCuGU-CAGUGa---ACg -5'
17134 5' -55.1 NC_004333.2 + 20579 0.66 0.679885
Target:  5'- cGGcGCGgCGGCGgcCGGCAG-CGgUUGCg -3'
miRNA:   3'- -UCuUGCgGCCGC--GCUGUCaGUgAACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.