miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17134 5' -55.1 NC_004333.2 + 48182 0.66 0.668848
Target:  5'- --cAUGCCGGCGCGGugcgcgcgccCGGUUGCcgccUGCg -3'
miRNA:   3'- ucuUGCGGCCGCGCU----------GUCAGUGa---ACG- -5'
17134 5' -55.1 NC_004333.2 + 47555 0.72 0.360144
Target:  5'- -cGGCGCCucguucaGCGCGGCAGUCGCcgccgGCg -3'
miRNA:   3'- ucUUGCGGc------CGCGCUGUCAGUGaa---CG- -5'
17134 5' -55.1 NC_004333.2 + 47498 0.68 0.547383
Target:  5'- cGGAuugGCGCCGGCgaGCGGCGauguagcugcGaUUGCUUGCg -3'
miRNA:   3'- -UCU---UGCGGCCG--CGCUGU----------C-AGUGAACG- -5'
17134 5' -55.1 NC_004333.2 + 47495 0.72 0.360144
Target:  5'- uGAACgaggcgccgGCCGGCGCGAcCAGUaCAUUgaaUGCa -3'
miRNA:   3'- uCUUG---------CGGCCGCGCU-GUCA-GUGA---ACG- -5'
17134 5' -55.1 NC_004333.2 + 47472 0.66 0.690876
Target:  5'- --cGCGCCGGCGgCGACuGcCGCg--- -3'
miRNA:   3'- ucuUGCGGCCGC-GCUGuCaGUGaacg -5'
17134 5' -55.1 NC_004333.2 + 46926 0.68 0.569186
Target:  5'- cGAGCGCaCGGCGuCGAUgAGcaGCUUGUg -3'
miRNA:   3'- uCUUGCG-GCCGC-GCUG-UCagUGAACG- -5'
17134 5' -55.1 NC_004333.2 + 46816 0.66 0.668848
Target:  5'- -cGACGCCGaGUGCGuCGGUCAgUucgGUg -3'
miRNA:   3'- ucUUGCGGC-CGCGCuGUCAGUgAa--CG- -5'
17134 5' -55.1 NC_004333.2 + 44864 0.68 0.569186
Target:  5'- aAGAuCGCCGcGCGCGACAaccugcccgacUCGCU-GCg -3'
miRNA:   3'- -UCUuGCGGC-CGCGCUGUc----------AGUGAaCG- -5'
17134 5' -55.1 NC_004333.2 + 44634 0.66 0.712672
Target:  5'- --cGCGUCGGUGuCGAuCAGUgcgUACUUGUa -3'
miRNA:   3'- ucuUGCGGCCGC-GCU-GUCA---GUGAACG- -5'
17134 5' -55.1 NC_004333.2 + 44519 0.68 0.546299
Target:  5'- uGGACGCCGGC-CGAUcaccccgAG-CACUUcGCg -3'
miRNA:   3'- uCUUGCGGCCGcGCUG-------UCaGUGAA-CG- -5'
17134 5' -55.1 NC_004333.2 + 42226 0.67 0.613351
Target:  5'- gAGGACGCUguugcccucgGGCGUGAgcGUCAUgucgUGCa -3'
miRNA:   3'- -UCUUGCGG----------CCGCGCUguCAGUGa---ACG- -5'
17134 5' -55.1 NC_004333.2 + 42084 0.67 0.602262
Target:  5'- aGGAuaGCGUCGugcuGCGCGACGaggcguGUCGCgaggUGCg -3'
miRNA:   3'- -UCU--UGCGGC----CGCGCUGU------CAGUGa---ACG- -5'
17134 5' -55.1 NC_004333.2 + 41648 0.67 0.624458
Target:  5'- cGGGCGCgGGCuGCGGCcGUaCGCcgGCa -3'
miRNA:   3'- uCUUGCGgCCG-CGCUGuCA-GUGaaCG- -5'
17134 5' -55.1 NC_004333.2 + 40897 0.68 0.580171
Target:  5'- --uGCGCCGGCuuGCGcaugaaAGUCGCaUGCa -3'
miRNA:   3'- ucuUGCGGCCG--CGCug----UCAGUGaACG- -5'
17134 5' -55.1 NC_004333.2 + 40834 0.66 0.712672
Target:  5'- cAGAACGUCgaagaGGCGCGcGCcuucuGGUCGCcgGCg -3'
miRNA:   3'- -UCUUGCGG-----CCGCGC-UG-----UCAGUGaaCG- -5'
17134 5' -55.1 NC_004333.2 + 39118 0.69 0.504644
Target:  5'- -cGACGCUGacauGCGCGACGGcaUCgGCUUGCc -3'
miRNA:   3'- ucUUGCGGC----CGCGCUGUC--AG-UGAACG- -5'
17134 5' -55.1 NC_004333.2 + 38774 0.67 0.635571
Target:  5'- cGAGCGCCGGCGgCuGCGGgaauuucagCGCggcgGCc -3'
miRNA:   3'- uCUUGCGGCCGC-GcUGUCa--------GUGaa--CG- -5'
17134 5' -55.1 NC_004333.2 + 38388 0.73 0.288383
Target:  5'- gGGuGCGCCGGCGUGACgccggccacGGUCAagacgGCg -3'
miRNA:   3'- -UCuUGCGGCCGCGCUG---------UCAGUgaa--CG- -5'
17134 5' -55.1 NC_004333.2 + 38372 0.7 0.424009
Target:  5'- cGGuCGCCGcGUGC-ACGGUCGCgcgUGCa -3'
miRNA:   3'- uCUuGCGGC-CGCGcUGUCAGUGa--ACG- -5'
17134 5' -55.1 NC_004333.2 + 38303 0.69 0.515203
Target:  5'- -uGACGaaCGGCGCGGCg--CGCUUGCu -3'
miRNA:   3'- ucUUGCg-GCCGCGCUGucaGUGAACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.