Results 1 - 20 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17134 | 5' | -55.1 | NC_004333.2 | + | 10882 | 1.12 | 0.000514 |
Target: 5'- aAGAACGCCGGCGCGACAGUCACUUGCg -3' miRNA: 3'- -UCUUGCGGCCGCGCUGUCAGUGAACG- -5' |
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17134 | 5' | -55.1 | NC_004333.2 | + | 18834 | 0.69 | 0.515203 |
Target: 5'- cGAA-GCCcGCGCGGCAGUaCGCagUUGCc -3' miRNA: 3'- uCUUgCGGcCGCGCUGUCA-GUG--AACG- -5' |
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17134 | 5' | -55.1 | NC_004333.2 | + | 27823 | 0.68 | 0.536578 |
Target: 5'- cGAAgccaGCCGGCGUG-CAGaUCGCUUucaGCa -3' miRNA: 3'- uCUUg---CGGCCGCGCuGUC-AGUGAA---CG- -5' |
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17134 | 5' | -55.1 | NC_004333.2 | + | 40834 | 0.66 | 0.712672 |
Target: 5'- cAGAACGUCgaagaGGCGCGcGCcuucuGGUCGCcgGCg -3' miRNA: 3'- -UCUUGCGG-----CCGCGC-UG-----UCAGUGaaCG- -5' |
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17134 | 5' | -55.1 | NC_004333.2 | + | 25420 | 0.73 | 0.303303 |
Target: 5'- cAGcgUGCCGGCgGCGGCcGUCACgccggGCg -3' miRNA: 3'- -UCuuGCGGCCG-CGCUGuCAGUGaa---CG- -5' |
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17134 | 5' | -55.1 | NC_004333.2 | + | 15487 | 0.72 | 0.326784 |
Target: 5'- cGAGCGCaacaGGgcugcuCGCGGCGGUCACcgGCg -3' miRNA: 3'- uCUUGCGg---CC------GCGCUGUCAGUGaaCG- -5' |
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17134 | 5' | -55.1 | NC_004333.2 | + | 19552 | 0.72 | 0.360144 |
Target: 5'- uGGGCGCCGGuCGC-ACGGUCgGCgcgGCa -3' miRNA: 3'- uCUUGCGGCC-GCGcUGUCAG-UGaa-CG- -5' |
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17134 | 5' | -55.1 | NC_004333.2 | + | 47495 | 0.72 | 0.360144 |
Target: 5'- uGAACgaggcgccgGCCGGCGCGAcCAGUaCAUUgaaUGCa -3' miRNA: 3'- uCUUG---------CGGCCGCGCU-GUCA-GUGA---ACG- -5' |
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17134 | 5' | -55.1 | NC_004333.2 | + | 9602 | 0.7 | 0.424009 |
Target: 5'- ----aGCCGGCGCGGCAucgGcCGgUUGCg -3' miRNA: 3'- ucuugCGGCCGCGCUGU---CaGUgAACG- -5' |
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17134 | 5' | -55.1 | NC_004333.2 | + | 4106 | 0.69 | 0.515203 |
Target: 5'- ----aGCgGGCGCGACAGaUCAUcgaauUUGCc -3' miRNA: 3'- ucuugCGgCCGCGCUGUC-AGUG-----AACG- -5' |
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17134 | 5' | -55.1 | NC_004333.2 | + | 27379 | 0.7 | 0.473558 |
Target: 5'- uGGAAgUGcCCGGCGCGACGgccgugccGUCAUguUUGCc -3' miRNA: 3'- -UCUU-GC-GGCCGCGCUGU--------CAGUG--AACG- -5' |
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17134 | 5' | -55.1 | NC_004333.2 | + | 22002 | 0.71 | 0.414475 |
Target: 5'- --uGCGUCGGCGCGAauCAGcgCGCggGCg -3' miRNA: 3'- ucuUGCGGCCGCGCU--GUCa-GUGaaCG- -5' |
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17134 | 5' | -55.1 | NC_004333.2 | + | 18598 | 0.78 | 0.139716 |
Target: 5'- -aAACGaCCGGCGCGGCAGgCGCggGCg -3' miRNA: 3'- ucUUGC-GGCCGCGCUGUCaGUGaaCG- -5' |
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17134 | 5' | -55.1 | NC_004333.2 | + | 25747 | 0.69 | 0.49418 |
Target: 5'- ----gGUCGGCGUGAaGGUCGgUUGCg -3' miRNA: 3'- ucuugCGGCCGCGCUgUCAGUgAACG- -5' |
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17134 | 5' | -55.1 | NC_004333.2 | + | 31226 | 0.74 | 0.267094 |
Target: 5'- --cAUGCCGGuCGCGACGGcCGCgcgGCg -3' miRNA: 3'- ucuUGCGGCC-GCGCUGUCaGUGaa-CG- -5' |
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17134 | 5' | -55.1 | NC_004333.2 | + | 25311 | 0.71 | 0.413529 |
Target: 5'- -cGACGCCGGCgacugccGCGACguacguaacGGUCGCgUUGCc -3' miRNA: 3'- ucUUGCGGCCG-------CGCUG---------UCAGUG-AACG- -5' |
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17134 | 5' | -55.1 | NC_004333.2 | + | 39118 | 0.69 | 0.504644 |
Target: 5'- -cGACGCUGacauGCGCGACGGcaUCgGCUUGCc -3' miRNA: 3'- ucUUGCGGC----CGCGCUGUC--AG-UGAACG- -5' |
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17134 | 5' | -55.1 | NC_004333.2 | + | 19496 | 0.69 | 0.52585 |
Target: 5'- -cGGCGCUGGCGCGcugGCGG-CGCUcGUg -3' miRNA: 3'- ucUUGCGGCCGCGC---UGUCaGUGAaCG- -5' |
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17134 | 5' | -55.1 | NC_004333.2 | + | 38388 | 0.73 | 0.288383 |
Target: 5'- gGGuGCGCCGGCGUGACgccggccacGGUCAagacgGCg -3' miRNA: 3'- -UCuUGCGGCCGCGCUG---------UCAGUgaa--CG- -5' |
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17134 | 5' | -55.1 | NC_004333.2 | + | 6746 | 0.72 | 0.360144 |
Target: 5'- cGAGCGCCacGGCGCccCGGUCGCgcGCc -3' miRNA: 3'- uCUUGCGG--CCGCGcuGUCAGUGaaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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