miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17134 5' -55.1 NC_004333.2 + 5062 0.68 0.547383
Target:  5'- -cGACGUCGGCGCGGCGcugaacagcGUCAgcaggugUGCg -3'
miRNA:   3'- ucUUGCGGCCGCGCUGU---------CAGUga-----ACG- -5'
17134 5' -55.1 NC_004333.2 + 27823 0.68 0.536578
Target:  5'- cGAAgccaGCCGGCGUG-CAGaUCGCUUucaGCa -3'
miRNA:   3'- uCUUg---CGGCCGCGCuGUC-AGUGAA---CG- -5'
17134 5' -55.1 NC_004333.2 + 22002 0.71 0.414475
Target:  5'- --uGCGUCGGCGCGAauCAGcgCGCggGCg -3'
miRNA:   3'- ucuUGCGGCCGCGCU--GUCa-GUGaaCG- -5'
17134 5' -55.1 NC_004333.2 + 38388 0.73 0.288383
Target:  5'- gGGuGCGCCGGCGUGACgccggccacGGUCAagacgGCg -3'
miRNA:   3'- -UCuUGCGGCCGCGCUG---------UCAGUgaa--CG- -5'
17134 5' -55.1 NC_004333.2 + 20565 0.67 0.635571
Target:  5'- uGAuCGUCGGCGCGuCGgGUCGCgccgUGg -3'
miRNA:   3'- uCUuGCGGCCGCGCuGU-CAGUGa---ACg -5'
17134 5' -55.1 NC_004333.2 + 44864 0.68 0.569186
Target:  5'- aAGAuCGCCGcGCGCGACAaccugcccgacUCGCU-GCg -3'
miRNA:   3'- -UCUuGCGGC-CGCGCUGUc----------AGUGAaCG- -5'
17134 5' -55.1 NC_004333.2 + 18834 0.69 0.515203
Target:  5'- cGAA-GCCcGCGCGGCAGUaCGCagUUGCc -3'
miRNA:   3'- uCUUgCGGcCGCGCUGUCA-GUG--AACG- -5'
17134 5' -55.1 NC_004333.2 + 31226 0.74 0.267094
Target:  5'- --cAUGCCGGuCGCGACGGcCGCgcgGCg -3'
miRNA:   3'- ucuUGCGGCC-GCGCUGUCaGUGaa-CG- -5'
17134 5' -55.1 NC_004333.2 + 5541 0.68 0.569186
Target:  5'- -cGugGCCGGCGaCGGCuuggCGCgagUGCa -3'
miRNA:   3'- ucUugCGGCCGC-GCUGuca-GUGa--ACG- -5'
17134 5' -55.1 NC_004333.2 + 18598 0.78 0.139716
Target:  5'- -aAACGaCCGGCGCGGCAGgCGCggGCg -3'
miRNA:   3'- ucUUGC-GGCCGCGCUGUCaGUGaaCG- -5'
17134 5' -55.1 NC_004333.2 + 19496 0.69 0.52585
Target:  5'- -cGGCGCUGGCGCGcugGCGG-CGCUcGUg -3'
miRNA:   3'- ucUUGCGGCCGCGC---UGUCaGUGAaCG- -5'
17134 5' -55.1 NC_004333.2 + 13758 0.68 0.547383
Target:  5'- uAGGACGCCGcgcgccgcucGCGCGGCGugUAgUUGCu -3'
miRNA:   3'- -UCUUGCGGC----------CGCGCUGUcaGUgAACG- -5'
17134 5' -55.1 NC_004333.2 + 25747 0.69 0.49418
Target:  5'- ----gGUCGGCGUGAaGGUCGgUUGCg -3'
miRNA:   3'- ucuugCGGCCGCGCUgUCAGUgAACG- -5'
17134 5' -55.1 NC_004333.2 + 9602 0.7 0.424009
Target:  5'- ----aGCCGGCGCGGCAucgGcCGgUUGCg -3'
miRNA:   3'- ucuugCGGCCGCGCUGU---CaGUgAACG- -5'
17134 5' -55.1 NC_004333.2 + 19552 0.72 0.360144
Target:  5'- uGGGCGCCGGuCGC-ACGGUCgGCgcgGCa -3'
miRNA:   3'- uCUUGCGGCC-GCGcUGUCAG-UGaa-CG- -5'
17134 5' -55.1 NC_004333.2 + 25420 0.73 0.303303
Target:  5'- cAGcgUGCCGGCgGCGGCcGUCACgccggGCg -3'
miRNA:   3'- -UCuuGCGGCCG-CGCUGuCAGUGaa---CG- -5'
17134 5' -55.1 NC_004333.2 + 7271 0.66 0.689779
Target:  5'- -aGACGCCGaucaucuGCGCGACGGcgaACggGCg -3'
miRNA:   3'- ucUUGCGGC-------CGCGCUGUCag-UGaaCG- -5'
17134 5' -55.1 NC_004333.2 + 17290 0.67 0.635571
Target:  5'- uGAACGCCGGC-CGGCGcagcGUC-CUcgacaUGCc -3'
miRNA:   3'- uCUUGCGGCCGcGCUGU----CAGuGA-----ACG- -5'
17134 5' -55.1 NC_004333.2 + 42084 0.67 0.602262
Target:  5'- aGGAuaGCGUCGugcuGCGCGACGaggcguGUCGCgaggUGCg -3'
miRNA:   3'- -UCU--UGCGGC----CGCGCUGU------CAGUGa---ACG- -5'
17134 5' -55.1 NC_004333.2 + 40897 0.68 0.580171
Target:  5'- --uGCGCCGGCuuGCGcaugaaAGUCGCaUGCa -3'
miRNA:   3'- ucuUGCGGCCG--CGCug----UCAGUGaACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.