miRNA display CGI


Results 1 - 20 of 46 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17135 5' -57.5 NC_004333.2 + 770 0.66 0.553991
Target:  5'- gCUCGCgGgcGGCGGCACGAucgcgcucaCCGAGc- -3'
miRNA:   3'- -GAGCGgC--CCGUCGUGCUug-------GGCUUaa -5'
17135 5' -57.5 NC_004333.2 + 28756 0.66 0.553991
Target:  5'- gCUCGCgaucUGGcaGCAGCACGcACCgGAAUUc -3'
miRNA:   3'- -GAGCG----GCC--CGUCGUGCuUGGgCUUAA- -5'
17135 5' -57.5 NC_004333.2 + 45552 0.66 0.553991
Target:  5'- uCUCGCugaccugcuCGGGCGGCAggUGGACgCCGuAGUUg -3'
miRNA:   3'- -GAGCG---------GCCCGUCGU--GCUUG-GGC-UUAA- -5'
17135 5' -57.5 NC_004333.2 + 2003 0.66 0.553991
Target:  5'- -aCGCCGGcGCGG-AUGAuGCCCGAc-- -3'
miRNA:   3'- gaGCGGCC-CGUCgUGCU-UGGGCUuaa -5'
17135 5' -57.5 NC_004333.2 + 37611 0.66 0.543214
Target:  5'- gUCGCCGGuGCuGCAUGAugUCa---- -3'
miRNA:   3'- gAGCGGCC-CGuCGUGCUugGGcuuaa -5'
17135 5' -57.5 NC_004333.2 + 24289 0.66 0.543214
Target:  5'- gUCGCCcGGCGacuGCGCG-ACCUGGAa- -3'
miRNA:   3'- gAGCGGcCCGU---CGUGCuUGGGCUUaa -5'
17135 5' -57.5 NC_004333.2 + 26188 0.66 0.543214
Target:  5'- gCUCGUccugcuugCGGGCGGCuacccCGAagucgccuGCCCGAAUc -3'
miRNA:   3'- -GAGCG--------GCCCGUCGu----GCU--------UGGGCUUAa -5'
17135 5' -57.5 NC_004333.2 + 10821 0.66 0.543214
Target:  5'- -gCGCCGGGCcGCGCGGua-CGAu-- -3'
miRNA:   3'- gaGCGGCCCGuCGUGCUuggGCUuaa -5'
17135 5' -57.5 NC_004333.2 + 13204 0.66 0.543214
Target:  5'- uUCGCCGGcaucagcaugacGCAGCucGCGAugCCGu--- -3'
miRNA:   3'- gAGCGGCC------------CGUCG--UGCUugGGCuuaa -5'
17135 5' -57.5 NC_004333.2 + 4333 0.66 0.532506
Target:  5'- gUCGaCCGGGC-GCACGAACgUGc--- -3'
miRNA:   3'- gAGC-GGCCCGuCGUGCUUGgGCuuaa -5'
17135 5' -57.5 NC_004333.2 + 12451 0.66 0.529309
Target:  5'- -gCGCCGGGCggGGCGCGGgcgggcgcuacggcGCCCc---- -3'
miRNA:   3'- gaGCGGCCCG--UCGUGCU--------------UGGGcuuaa -5'
17135 5' -57.5 NC_004333.2 + 31345 0.66 0.511328
Target:  5'- uCUCGCCGGcauGguGCuugcacugACGAACaCCGAGa- -3'
miRNA:   3'- -GAGCGGCC---CguCG--------UGCUUG-GGCUUaa -5'
17135 5' -57.5 NC_004333.2 + 35561 0.66 0.50087
Target:  5'- gCUCGCa-GGCGGCACGcucaccGGCCCGu--- -3'
miRNA:   3'- -GAGCGgcCCGUCGUGC------UUGGGCuuaa -5'
17135 5' -57.5 NC_004333.2 + 8845 0.67 0.490507
Target:  5'- aUUGCCGGcgacuucgcCAGCuCGAACCCGAu-- -3'
miRNA:   3'- gAGCGGCCc--------GUCGuGCUUGGGCUuaa -5'
17135 5' -57.5 NC_004333.2 + 12462 0.67 0.470089
Target:  5'- gUCGUCGGcCGGCAC--GCCCGggUc -3'
miRNA:   3'- gAGCGGCCcGUCGUGcuUGGGCuuAa -5'
17135 5' -57.5 NC_004333.2 + 23961 0.67 0.470089
Target:  5'- -cCGCCGGGU-GCGgGAacagGCCCGAc-- -3'
miRNA:   3'- gaGCGGCCCGuCGUgCU----UGGGCUuaa -5'
17135 5' -57.5 NC_004333.2 + 12873 0.67 0.460044
Target:  5'- --gGCCuGGGCcugcaguGCGuCGAGCCCGGAUa -3'
miRNA:   3'- gagCGG-CCCGu------CGU-GCUUGGGCUUAa -5'
17135 5' -57.5 NC_004333.2 + 41874 0.67 0.450114
Target:  5'- -cCGUCGGGCAGCuuG-ACCgGAAa- -3'
miRNA:   3'- gaGCGGCCCGUCGugCuUGGgCUUaa -5'
17135 5' -57.5 NC_004333.2 + 34027 0.68 0.440303
Target:  5'- aCUCGCgaCGGGCAuCACGGugCCGu--- -3'
miRNA:   3'- -GAGCG--GCCCGUcGUGCUugGGCuuaa -5'
17135 5' -57.5 NC_004333.2 + 18528 0.68 0.440303
Target:  5'- -gUGCCGGGUuGCGCGAACUuuuUGAAc- -3'
miRNA:   3'- gaGCGGCCCGuCGUGCUUGG---GCUUaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.