miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17136 3' -55.2 NC_004333.2 + 39394 0.66 0.734221
Target:  5'- --aGAAGCGCGCCGccGCCGagCGaaUCGg -3'
miRNA:   3'- ggaCUUUGCGCGGC--CGGCa-GUgaAGC- -5'
17136 3' -55.2 NC_004333.2 + 30223 0.66 0.734221
Target:  5'- gCCUGAucgaucGACGCGCCGcGCgCGaUCAgUgCGu -3'
miRNA:   3'- -GGACU------UUGCGCGGC-CG-GC-AGUgAaGC- -5'
17136 3' -55.2 NC_004333.2 + 17280 0.66 0.734221
Target:  5'- gCCUucGACGUgaacGCCGGCCGgCGCagCGu -3'
miRNA:   3'- -GGAcuUUGCG----CGGCCGGCaGUGaaGC- -5'
17136 3' -55.2 NC_004333.2 + 30715 0.66 0.734221
Target:  5'- uCCUGGAagcugGCaaGCuCGGCCGUgGCgUCGc -3'
miRNA:   3'- -GGACUU-----UGcgCG-GCCGGCAgUGaAGC- -5'
17136 3' -55.2 NC_004333.2 + 47923 0.66 0.734221
Target:  5'- --aGAAGCGCGCCGaGCCacaugcUCACcUCc -3'
miRNA:   3'- ggaCUUUGCGCGGC-CGGc-----AGUGaAGc -5'
17136 3' -55.2 NC_004333.2 + 9670 0.66 0.723667
Target:  5'- aCCggccGAugcCGCGCCGGCUGgCGCUg-- -3'
miRNA:   3'- -GGa---CUuu-GCGCGGCCGGCaGUGAagc -5'
17136 3' -55.2 NC_004333.2 + 47464 0.66 0.713022
Target:  5'- aUUGcuuGCGCGUCGGUCGgCGCUUUc -3'
miRNA:   3'- gGACuu-UGCGCGGCCGGCaGUGAAGc -5'
17136 3' -55.2 NC_004333.2 + 37357 0.66 0.713022
Target:  5'- cCCUGGcuacgcGACGUGCaccgcgucgcgCGGCCGUC-CUcaUCGu -3'
miRNA:   3'- -GGACU------UUGCGCG-----------GCCGGCAGuGA--AGC- -5'
17136 3' -55.2 NC_004333.2 + 33390 0.66 0.713022
Target:  5'- aUCUGAuccguGGCGCGCCGGuuGgcUCGaugCGg -3'
miRNA:   3'- -GGACU-----UUGCGCGGCCggC--AGUgaaGC- -5'
17136 3' -55.2 NC_004333.2 + 38673 0.66 0.713022
Target:  5'- --aGcgGCGCGcCCGGCUGUagcuggCGCUUCa -3'
miRNA:   3'- ggaCuuUGCGC-GGCCGGCA------GUGAAGc -5'
17136 3' -55.2 NC_004333.2 + 47706 0.66 0.713022
Target:  5'- --cGAAGCGUucacgcucGCCGGCaCGUCGCg--- -3'
miRNA:   3'- ggaCUUUGCG--------CGGCCG-GCAGUGaagc -5'
17136 3' -55.2 NC_004333.2 + 14433 0.66 0.702299
Target:  5'- aCCUGAAGCGCaaacauGCCG-CCGugUCGCgcgUCu -3'
miRNA:   3'- -GGACUUUGCG------CGGCcGGC--AGUGa--AGc -5'
17136 3' -55.2 NC_004333.2 + 6728 0.66 0.702299
Target:  5'- gCCUGcucGAGCGCGCCGagcgcgcuGCCGagCGCgaUCGa -3'
miRNA:   3'- -GGAC---UUUGCGCGGC--------CGGCa-GUGa-AGC- -5'
17136 3' -55.2 NC_004333.2 + 20453 0.66 0.691508
Target:  5'- --cGAAGCcuGCGCCGGUCGUgACg--- -3'
miRNA:   3'- ggaCUUUG--CGCGGCCGGCAgUGaagc -5'
17136 3' -55.2 NC_004333.2 + 32250 0.66 0.690425
Target:  5'- uCCUGAAccucggcgaguaaGCGCgugGCCGGCCugccgacaGUCGCcgcgUUCGa -3'
miRNA:   3'- -GGACUU-------------UGCG---CGGCCGG--------CAGUG----AAGC- -5'
17136 3' -55.2 NC_004333.2 + 47782 0.67 0.68066
Target:  5'- --cGcGACGUGCCGGCgagCGUgaaCGCUUCGu -3'
miRNA:   3'- ggaCuUUGCGCGGCCG---GCA---GUGAAGC- -5'
17136 3' -55.2 NC_004333.2 + 38391 0.67 0.669765
Target:  5'- cCCUcGAGGCGCauuucGCCGGUCGcCGCgugcacggUCGc -3'
miRNA:   3'- -GGA-CUUUGCG-----CGGCCGGCaGUGa-------AGC- -5'
17136 3' -55.2 NC_004333.2 + 28208 0.67 0.658836
Target:  5'- uCCUGGuugucuuGCGCGuCCgGGCgCGUCACggUGa -3'
miRNA:   3'- -GGACUu------UGCGC-GG-CCG-GCAGUGaaGC- -5'
17136 3' -55.2 NC_004333.2 + 22254 0.67 0.658836
Target:  5'- gCCgccGAAcCGcCGCCGGCCGcCGCcggCGa -3'
miRNA:   3'- -GGa--CUUuGC-GCGGCCGGCaGUGaa-GC- -5'
17136 3' -55.2 NC_004333.2 + 25553 0.67 0.647882
Target:  5'- -aUGAcACGCaacCCGGCUGUCGCcgCGa -3'
miRNA:   3'- ggACUuUGCGc--GGCCGGCAGUGaaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.