Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17136 | 3' | -55.2 | NC_004333.2 | + | 39394 | 0.66 | 0.734221 |
Target: 5'- --aGAAGCGCGCCGccGCCGagCGaaUCGg -3' miRNA: 3'- ggaCUUUGCGCGGC--CGGCa-GUgaAGC- -5' |
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17136 | 3' | -55.2 | NC_004333.2 | + | 17280 | 0.66 | 0.734221 |
Target: 5'- gCCUucGACGUgaacGCCGGCCGgCGCagCGu -3' miRNA: 3'- -GGAcuUUGCG----CGGCCGGCaGUGaaGC- -5' |
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17136 | 3' | -55.2 | NC_004333.2 | + | 47706 | 0.66 | 0.713022 |
Target: 5'- --cGAAGCGUucacgcucGCCGGCaCGUCGCg--- -3' miRNA: 3'- ggaCUUUGCG--------CGGCCG-GCAGUGaagc -5' |
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17136 | 3' | -55.2 | NC_004333.2 | + | 20453 | 0.66 | 0.691508 |
Target: 5'- --cGAAGCcuGCGCCGGUCGUgACg--- -3' miRNA: 3'- ggaCUUUG--CGCGGCCGGCAgUGaagc -5' |
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17136 | 3' | -55.2 | NC_004333.2 | + | 37357 | 0.66 | 0.713022 |
Target: 5'- cCCUGGcuacgcGACGUGCaccgcgucgcgCGGCCGUC-CUcaUCGu -3' miRNA: 3'- -GGACU------UUGCGCG-----------GCCGGCAGuGA--AGC- -5' |
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17136 | 3' | -55.2 | NC_004333.2 | + | 30223 | 0.66 | 0.734221 |
Target: 5'- gCCUGAucgaucGACGCGCCGcGCgCGaUCAgUgCGu -3' miRNA: 3'- -GGACU------UUGCGCGGC-CG-GC-AGUgAaGC- -5' |
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17136 | 3' | -55.2 | NC_004333.2 | + | 32250 | 0.66 | 0.690425 |
Target: 5'- uCCUGAAccucggcgaguaaGCGCgugGCCGGCCugccgacaGUCGCcgcgUUCGa -3' miRNA: 3'- -GGACUU-------------UGCG---CGGCCGG--------CAGUG----AAGC- -5' |
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17136 | 3' | -55.2 | NC_004333.2 | + | 14433 | 0.66 | 0.702299 |
Target: 5'- aCCUGAAGCGCaaacauGCCG-CCGugUCGCgcgUCu -3' miRNA: 3'- -GGACUUUGCG------CGGCcGGC--AGUGa--AGc -5' |
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17136 | 3' | -55.2 | NC_004333.2 | + | 6728 | 0.66 | 0.702299 |
Target: 5'- gCCUGcucGAGCGCGCCGagcgcgcuGCCGagCGCgaUCGa -3' miRNA: 3'- -GGAC---UUUGCGCGGC--------CGGCa-GUGa-AGC- -5' |
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17136 | 3' | -55.2 | NC_004333.2 | + | 47923 | 0.66 | 0.734221 |
Target: 5'- --aGAAGCGCGCCGaGCCacaugcUCACcUCc -3' miRNA: 3'- ggaCUUUGCGCGGC-CGGc-----AGUGaAGc -5' |
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17136 | 3' | -55.2 | NC_004333.2 | + | 9670 | 0.66 | 0.723667 |
Target: 5'- aCCggccGAugcCGCGCCGGCUGgCGCUg-- -3' miRNA: 3'- -GGa---CUuu-GCGCGGCCGGCaGUGAagc -5' |
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17136 | 3' | -55.2 | NC_004333.2 | + | 33390 | 0.66 | 0.713022 |
Target: 5'- aUCUGAuccguGGCGCGCCGGuuGgcUCGaugCGg -3' miRNA: 3'- -GGACU-----UUGCGCGGCCggC--AGUgaaGC- -5' |
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17136 | 3' | -55.2 | NC_004333.2 | + | 30715 | 0.66 | 0.734221 |
Target: 5'- uCCUGGAagcugGCaaGCuCGGCCGUgGCgUCGc -3' miRNA: 3'- -GGACUU-----UGcgCG-GCCGGCAgUGaAGC- -5' |
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17136 | 3' | -55.2 | NC_004333.2 | + | 47464 | 0.66 | 0.713022 |
Target: 5'- aUUGcuuGCGCGUCGGUCGgCGCUUUc -3' miRNA: 3'- gGACuu-UGCGCGGCCGGCaGUGAAGc -5' |
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17136 | 3' | -55.2 | NC_004333.2 | + | 38673 | 0.66 | 0.713022 |
Target: 5'- --aGcgGCGCGcCCGGCUGUagcuggCGCUUCa -3' miRNA: 3'- ggaCuuUGCGC-GGCCGGCA------GUGAAGc -5' |
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17136 | 3' | -55.2 | NC_004333.2 | + | 25553 | 0.67 | 0.647882 |
Target: 5'- -aUGAcACGCaacCCGGCUGUCGCcgCGa -3' miRNA: 3'- ggACUuUGCGc--GGCCGGCAGUGaaGC- -5' |
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17136 | 3' | -55.2 | NC_004333.2 | + | 12004 | 0.67 | 0.647882 |
Target: 5'- gCCUGGAGCGCGCguaaUGGCgCG-CGCgcCGc -3' miRNA: 3'- -GGACUUUGCGCG----GCCG-GCaGUGaaGC- -5' |
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17136 | 3' | -55.2 | NC_004333.2 | + | 22254 | 0.67 | 0.658836 |
Target: 5'- gCCgccGAAcCGcCGCCGGCCGcCGCcggCGa -3' miRNA: 3'- -GGa--CUUuGC-GCGGCCGGCaGUGaa-GC- -5' |
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17136 | 3' | -55.2 | NC_004333.2 | + | 20598 | 0.67 | 0.647882 |
Target: 5'- uUCUGcAGGCGCgGCuCGGCC-UCGCgcagUCGg -3' miRNA: 3'- -GGAC-UUUGCG-CG-GCCGGcAGUGa---AGC- -5' |
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17136 | 3' | -55.2 | NC_004333.2 | + | 28208 | 0.67 | 0.658836 |
Target: 5'- uCCUGGuugucuuGCGCGuCCgGGCgCGUCACggUGa -3' miRNA: 3'- -GGACUu------UGCGC-GG-CCG-GCAGUGaaGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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