miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17136 3' -55.2 NC_004333.2 + 20598 0.67 0.647882
Target:  5'- uUCUGcAGGCGCgGCuCGGCC-UCGCgcagUCGg -3'
miRNA:   3'- -GGAC-UUUGCG-CG-GCCGGcAGUGa---AGC- -5'
17136 3' -55.2 NC_004333.2 + 12004 0.67 0.647882
Target:  5'- gCCUGGAGCGCGCguaaUGGCgCG-CGCgcCGc -3'
miRNA:   3'- -GGACUUUGCGCG----GCCG-GCaGUGaaGC- -5'
17136 3' -55.2 NC_004333.2 + 25553 0.67 0.647882
Target:  5'- -aUGAcACGCaacCCGGCUGUCGCcgCGa -3'
miRNA:   3'- ggACUuUGCGc--GGCCGGCAGUGaaGC- -5'
17136 3' -55.2 NC_004333.2 + 44517 0.67 0.636914
Target:  5'- aCUGGA---CGCCGGCCGaucaccccgagCACUUCGc -3'
miRNA:   3'- gGACUUugcGCGGCCGGCa----------GUGAAGC- -5'
17136 3' -55.2 NC_004333.2 + 32161 0.67 0.635817
Target:  5'- aCUG-AACGCGCCGacGCCGaucuaugcgaucgUCGCgUCGg -3'
miRNA:   3'- gGACuUUGCGCGGC--CGGC-------------AGUGaAGC- -5'
17136 3' -55.2 NC_004333.2 + 14307 0.68 0.604022
Target:  5'- --aGAGGCGCGCgCGcacGCCGUCGCa--- -3'
miRNA:   3'- ggaCUUUGCGCG-GC---CGGCAGUGaagc -5'
17136 3' -55.2 NC_004333.2 + 31436 0.68 0.593094
Target:  5'- --cGAAACGCG-CGGCugCGUCGCU-CGg -3'
miRNA:   3'- ggaCUUUGCGCgGCCG--GCAGUGAaGC- -5'
17136 3' -55.2 NC_004333.2 + 7929 0.68 0.593094
Target:  5'- gUUGAuauuCGCGCC-GCUGUCGCcgUCGg -3'
miRNA:   3'- gGACUuu--GCGCGGcCGGCAGUGa-AGC- -5'
17136 3' -55.2 NC_004333.2 + 793 0.68 0.582198
Target:  5'- aCCUuGAGCGUGCCGGUCGccggCGCa--- -3'
miRNA:   3'- -GGAcUUUGCGCGGCCGGCa---GUGaagc -5'
17136 3' -55.2 NC_004333.2 + 12457 0.68 0.571344
Target:  5'- aCUG--GCGCGCCGGgCGgggCGCgggCGg -3'
miRNA:   3'- gGACuuUGCGCGGCCgGCa--GUGaa-GC- -5'
17136 3' -55.2 NC_004333.2 + 41599 0.68 0.571344
Target:  5'- gCUGAcGAUGUGCCGGU-GUUGCUUCu -3'
miRNA:   3'- gGACU-UUGCGCGGCCGgCAGUGAAGc -5'
17136 3' -55.2 NC_004333.2 + 21778 0.69 0.564854
Target:  5'- gCUGGcgcacgugcgcauagAGCGCGUcgagcugcuCGGCCGUCAuauCUUCGa -3'
miRNA:   3'- gGACU---------------UUGCGCG---------GCCGGCAGU---GAAGC- -5'
17136 3' -55.2 NC_004333.2 + 27509 0.69 0.560539
Target:  5'- aCCcGAAugGCGCCuggucgacaGCCGUCGCcgCGc -3'
miRNA:   3'- -GGaCUUugCGCGGc--------CGGCAGUGaaGC- -5'
17136 3' -55.2 NC_004333.2 + 25582 0.69 0.539108
Target:  5'- aCCa-AGACGCGCuCGGCCGcaUCuACUUCa -3'
miRNA:   3'- -GGacUUUGCGCG-GCCGGC--AG-UGAAGc -5'
17136 3' -55.2 NC_004333.2 + 1653 0.69 0.539108
Target:  5'- cCCUGAAuGCGCuGCgCGGUCGgaaacagCGCUUCc -3'
miRNA:   3'- -GGACUU-UGCG-CG-GCCGGCa------GUGAAGc -5'
17136 3' -55.2 NC_004333.2 + 2390 0.69 0.539108
Target:  5'- cCCaUGAcg-GCGCCGGCgGUCGCcuggUCGc -3'
miRNA:   3'- -GG-ACUuugCGCGGCCGgCAGUGa---AGC- -5'
17136 3' -55.2 NC_004333.2 + 31314 0.69 0.539108
Target:  5'- aCC-GAGACgGCGCugcgccgcgCGGCCGUCGCgcCGg -3'
miRNA:   3'- -GGaCUUUG-CGCG---------GCCGGCAGUGaaGC- -5'
17136 3' -55.2 NC_004333.2 + 26859 0.7 0.501288
Target:  5'- --cGAAGCGCGCCuacucgucggcagacGGCUuUUACUUCGg -3'
miRNA:   3'- ggaCUUUGCGCGG---------------CCGGcAGUGAAGC- -5'
17136 3' -55.2 NC_004333.2 + 11893 0.7 0.497156
Target:  5'- gCUGGAGCGCGCCgucgcgcugauGGCCGcgucgUACUUgCGc -3'
miRNA:   3'- gGACUUUGCGCGG-----------CCGGCa----GUGAA-GC- -5'
17136 3' -55.2 NC_004333.2 + 17360 0.7 0.497156
Target:  5'- --gGAcGCuGCGCCGGCCGgcguUCACgUCGa -3'
miRNA:   3'- ggaCUuUG-CGCGGCCGGC----AGUGaAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.