miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17136 3' -55.2 NC_004333.2 + 793 0.68 0.582198
Target:  5'- aCCUuGAGCGUGCCGGUCGccggCGCa--- -3'
miRNA:   3'- -GGAcUUUGCGCGGCCGGCa---GUGaagc -5'
17136 3' -55.2 NC_004333.2 + 1653 0.69 0.539108
Target:  5'- cCCUGAAuGCGCuGCgCGGUCGgaaacagCGCUUCc -3'
miRNA:   3'- -GGACUU-UGCG-CG-GCCGGCa------GUGAAGc -5'
17136 3' -55.2 NC_004333.2 + 2390 0.69 0.539108
Target:  5'- cCCaUGAcg-GCGCCGGCgGUCGCcuggUCGc -3'
miRNA:   3'- -GG-ACUuugCGCGGCCGgCAGUGa---AGC- -5'
17136 3' -55.2 NC_004333.2 + 4740 0.75 0.244938
Target:  5'- uCCUGAAgaaagacccGCGCGCCGGCCugcccGUCGCcaugaUCGc -3'
miRNA:   3'- -GGACUU---------UGCGCGGCCGG-----CAGUGa----AGC- -5'
17136 3' -55.2 NC_004333.2 + 6728 0.66 0.702299
Target:  5'- gCCUGcucGAGCGCGCCGagcgcgcuGCCGagCGCgaUCGa -3'
miRNA:   3'- -GGAC---UUUGCGCGGC--------CGGCa-GUGa-AGC- -5'
17136 3' -55.2 NC_004333.2 + 7929 0.68 0.593094
Target:  5'- gUUGAuauuCGCGCC-GCUGUCGCcgUCGg -3'
miRNA:   3'- gGACUuu--GCGCGGcCGGCAGUGa-AGC- -5'
17136 3' -55.2 NC_004333.2 + 9670 0.66 0.723667
Target:  5'- aCCggccGAugcCGCGCCGGCUGgCGCUg-- -3'
miRNA:   3'- -GGa---CUuu-GCGCGGCCGGCaGUGAagc -5'
17136 3' -55.2 NC_004333.2 + 10634 0.74 0.267244
Target:  5'- gCCUGcGAUGCGCCcgauaaacgcgcgauGGCCGUCugUUgCGa -3'
miRNA:   3'- -GGACuUUGCGCGG---------------CCGGCAGugAA-GC- -5'
17136 3' -55.2 NC_004333.2 + 10670 0.67 0.647882
Target:  5'- --cGGu-CGCGCCGGCCGgugCACg--- -3'
miRNA:   3'- ggaCUuuGCGCGGCCGGCa--GUGaagc -5'
17136 3' -55.2 NC_004333.2 + 11607 1.1 0.000942
Target:  5'- uCCUGAAACGCGCCGGCCGUCACUUCGc -3'
miRNA:   3'- -GGACUUUGCGCGGCCGGCAGUGAAGC- -5'
17136 3' -55.2 NC_004333.2 + 11893 0.7 0.497156
Target:  5'- gCUGGAGCGCGCCgucgcgcugauGGCCGcgucgUACUUgCGc -3'
miRNA:   3'- gGACUUUGCGCGG-----------CCGGCa----GUGAA-GC- -5'
17136 3' -55.2 NC_004333.2 + 12004 0.67 0.647882
Target:  5'- gCCUGGAGCGCGCguaaUGGCgCG-CGCgcCGc -3'
miRNA:   3'- -GGACUUUGCGCG----GCCG-GCaGUGaaGC- -5'
17136 3' -55.2 NC_004333.2 + 12457 0.68 0.571344
Target:  5'- aCUG--GCGCGCCGGgCGgggCGCgggCGg -3'
miRNA:   3'- gGACuuUGCGCGGCCgGCa--GUGaa-GC- -5'
17136 3' -55.2 NC_004333.2 + 13868 0.72 0.390539
Target:  5'- aUUG-AGCGCGCCGcGCCG-CGCgaagUCGg -3'
miRNA:   3'- gGACuUUGCGCGGC-CGGCaGUGa---AGC- -5'
17136 3' -55.2 NC_004333.2 + 14307 0.68 0.604022
Target:  5'- --aGAGGCGCGCgCGcacGCCGUCGCa--- -3'
miRNA:   3'- ggaCUUUGCGCG-GC---CGGCAGUGaagc -5'
17136 3' -55.2 NC_004333.2 + 14433 0.66 0.702299
Target:  5'- aCCUGAAGCGCaaacauGCCG-CCGugUCGCgcgUCu -3'
miRNA:   3'- -GGACUUUGCG------CGGCcGGC--AGUGa--AGc -5'
17136 3' -55.2 NC_004333.2 + 17280 0.66 0.734221
Target:  5'- gCCUucGACGUgaacGCCGGCCGgCGCagCGu -3'
miRNA:   3'- -GGAcuUUGCG----CGGCCGGCaGUGaaGC- -5'
17136 3' -55.2 NC_004333.2 + 17360 0.7 0.497156
Target:  5'- --gGAcGCuGCGCCGGCCGgcguUCACgUCGa -3'
miRNA:   3'- ggaCUuUG-CGCGGCCGGC----AGUGaAGC- -5'
17136 3' -55.2 NC_004333.2 + 18664 0.73 0.307516
Target:  5'- gCCUGc--CGCGCCGGUCGUUugUUg- -3'
miRNA:   3'- -GGACuuuGCGCGGCCGGCAGugAAgc -5'
17136 3' -55.2 NC_004333.2 + 19547 0.73 0.307516
Target:  5'- gCUGAuGgGCGCCGGUCG-CACggUCGg -3'
miRNA:   3'- gGACUuUgCGCGGCCGGCaGUGa-AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.