Results 1 - 20 of 56 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17136 | 3' | -55.2 | NC_004333.2 | + | 11607 | 1.1 | 0.000942 |
Target: 5'- uCCUGAAACGCGCCGGCCGUCACUUCGc -3' miRNA: 3'- -GGACUUUGCGCGGCCGGCAGUGAAGC- -5' |
|||||||
17136 | 3' | -55.2 | NC_004333.2 | + | 20598 | 0.67 | 0.647882 |
Target: 5'- uUCUGcAGGCGCgGCuCGGCC-UCGCgcagUCGg -3' miRNA: 3'- -GGAC-UUUGCG-CG-GCCGGcAGUGa---AGC- -5' |
|||||||
17136 | 3' | -55.2 | NC_004333.2 | + | 20453 | 0.66 | 0.691508 |
Target: 5'- --cGAAGCcuGCGCCGGUCGUgACg--- -3' miRNA: 3'- ggaCUUUG--CGCGGCCGGCAgUGaagc -5' |
|||||||
17136 | 3' | -55.2 | NC_004333.2 | + | 30715 | 0.66 | 0.734221 |
Target: 5'- uCCUGGAagcugGCaaGCuCGGCCGUgGCgUCGc -3' miRNA: 3'- -GGACUU-----UGcgCG-GCCGGCAgUGaAGC- -5' |
|||||||
17136 | 3' | -55.2 | NC_004333.2 | + | 19547 | 0.73 | 0.307516 |
Target: 5'- gCUGAuGgGCGCCGGUCG-CACggUCGg -3' miRNA: 3'- gGACUuUgCGCGGCCGGCaGUGa-AGC- -5' |
|||||||
17136 | 3' | -55.2 | NC_004333.2 | + | 47493 | 0.73 | 0.347257 |
Target: 5'- gCUGAacGAgGCGCCGGCCGgCGCg--- -3' miRNA: 3'- gGACU--UUgCGCGGCCGGCaGUGaagc -5' |
|||||||
17136 | 3' | -55.2 | NC_004333.2 | + | 22366 | 0.7 | 0.456734 |
Target: 5'- aCCUGcgccgcACGCGCCgaggauGGCCGUCugccaggucgagGCUUCGc -3' miRNA: 3'- -GGACuu----UGCGCGG------CCGGCAG------------UGAAGC- -5' |
|||||||
17136 | 3' | -55.2 | NC_004333.2 | + | 25657 | 0.7 | 0.456734 |
Target: 5'- --cGaAAGCGUcuuGCCGGCCGUCGCgaacgCGg -3' miRNA: 3'- ggaC-UUUGCG---CGGCCGGCAGUGaa---GC- -5' |
|||||||
17136 | 3' | -55.2 | NC_004333.2 | + | 2390 | 0.69 | 0.539108 |
Target: 5'- cCCaUGAcg-GCGCCGGCgGUCGCcuggUCGc -3' miRNA: 3'- -GG-ACUuugCGCGGCCGgCAGUGa---AGC- -5' |
|||||||
17136 | 3' | -55.2 | NC_004333.2 | + | 10670 | 0.67 | 0.647882 |
Target: 5'- --cGGu-CGCGCCGGCCGgugCACg--- -3' miRNA: 3'- ggaCUuuGCGCGGCCGGCa--GUGaagc -5' |
|||||||
17136 | 3' | -55.2 | NC_004333.2 | + | 793 | 0.68 | 0.582198 |
Target: 5'- aCCUuGAGCGUGCCGGUCGccggCGCa--- -3' miRNA: 3'- -GGAcUUUGCGCGGCCGGCa---GUGaagc -5' |
|||||||
17136 | 3' | -55.2 | NC_004333.2 | + | 30125 | 0.7 | 0.486894 |
Target: 5'- aCUGGAagaugcccuGCGCGCCuuGGCCGcCGCcuUUCGu -3' miRNA: 3'- gGACUU---------UGCGCGG--CCGGCaGUG--AAGC- -5' |
|||||||
17136 | 3' | -55.2 | NC_004333.2 | + | 25415 | 0.77 | 0.188195 |
Target: 5'- gCCUGcAGCGUGCCggcggcGGCCGUCACgcCGg -3' miRNA: 3'- -GGACuUUGCGCGG------CCGGCAGUGaaGC- -5' |
|||||||
17136 | 3' | -55.2 | NC_004333.2 | + | 7929 | 0.68 | 0.593094 |
Target: 5'- gUUGAuauuCGCGCC-GCUGUCGCcgUCGg -3' miRNA: 3'- gGACUuu--GCGCGGcCGGCAGUGa-AGC- -5' |
|||||||
17136 | 3' | -55.2 | NC_004333.2 | + | 23226 | 0.74 | 0.271347 |
Target: 5'- uCUUGAucacggcggcgAACGCGCCGGUCGUgUugUUCGu -3' miRNA: 3'- -GGACU-----------UUGCGCGGCCGGCA-GugAAGC- -5' |
|||||||
17136 | 3' | -55.2 | NC_004333.2 | + | 47951 | 0.7 | 0.466678 |
Target: 5'- gCUGcucGGCGCGCUGGUCGUCGgCgucaUCGg -3' miRNA: 3'- gGACu--UUGCGCGGCCGGCAGU-Ga---AGC- -5' |
|||||||
17136 | 3' | -55.2 | NC_004333.2 | + | 44517 | 0.67 | 0.636914 |
Target: 5'- aCUGGA---CGCCGGCCGaucaccccgagCACUUCGc -3' miRNA: 3'- gGACUUugcGCGGCCGGCa----------GUGAAGC- -5' |
|||||||
17136 | 3' | -55.2 | NC_004333.2 | + | 28208 | 0.67 | 0.658836 |
Target: 5'- uCCUGGuugucuuGCGCGuCCgGGCgCGUCACggUGa -3' miRNA: 3'- -GGACUu------UGCGC-GG-CCG-GCAGUGaaGC- -5' |
|||||||
17136 | 3' | -55.2 | NC_004333.2 | + | 46499 | 0.74 | 0.299998 |
Target: 5'- gCUGcAAGCGCGCCGGUgGUCugUc-- -3' miRNA: 3'- gGAC-UUUGCGCGGCCGgCAGugAagc -5' |
|||||||
17136 | 3' | -55.2 | NC_004333.2 | + | 13868 | 0.72 | 0.390539 |
Target: 5'- aUUG-AGCGCGCCGcGCCG-CGCgaagUCGg -3' miRNA: 3'- gGACuUUGCGCGGC-CGGCaGUGa---AGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home