miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17136 5' -53.1 NC_004333.2 + 41430 0.66 0.800084
Target:  5'- aUCGAAcaGGCGCUGCUcgacgcGGgcgAGUCGg -3'
miRNA:   3'- cAGCUUcaUCGCGACGG------UCa--UCAGCg -5'
17136 5' -53.1 NC_004333.2 + 29845 0.66 0.800084
Target:  5'- aGUCGAcugaucguucgcAGcgaAGCGC-GCgCGGUAGUCGUc -3'
miRNA:   3'- -CAGCU------------UCa--UCGCGaCG-GUCAUCAGCG- -5'
17136 5' -53.1 NC_004333.2 + 26835 0.66 0.800084
Target:  5'- cGUCGuAGcgAGUGCUGUCGc--GUCGCg -3'
miRNA:   3'- -CAGCuUCa-UCGCGACGGUcauCAGCG- -5'
17136 5' -53.1 NC_004333.2 + 36300 0.66 0.779886
Target:  5'- -gCGAuac-GCGCcGCCcgAGUAGUCGCc -3'
miRNA:   3'- caGCUucauCGCGaCGG--UCAUCAGCG- -5'
17136 5' -53.1 NC_004333.2 + 13926 0.66 0.779886
Target:  5'- -gCGAucGUGGcCGCUGCCGccagcGUGGcCGCc -3'
miRNA:   3'- caGCUu-CAUC-GCGACGGU-----CAUCaGCG- -5'
17136 5' -53.1 NC_004333.2 + 20647 0.67 0.748401
Target:  5'- cGUCGcaacGGCGCUgcGCCAGUGGcaggaggCGCa -3'
miRNA:   3'- -CAGCuucaUCGCGA--CGGUCAUCa------GCG- -5'
17136 5' -53.1 NC_004333.2 + 46765 0.67 0.737638
Target:  5'- cGUCGAAGUGuccgccGCGCUGCuCGGcacGUCcaaGCg -3'
miRNA:   3'- -CAGCUUCAU------CGCGACG-GUCau-CAG---CG- -5'
17136 5' -53.1 NC_004333.2 + 39018 0.67 0.737638
Target:  5'- -aUGAAGcGGCGaUUGCCGGUcgcGUCGUg -3'
miRNA:   3'- caGCUUCaUCGC-GACGGUCAu--CAGCG- -5'
17136 5' -53.1 NC_004333.2 + 19487 0.67 0.726764
Target:  5'- cGUCGcGGGUAGCGCgGCgUAGgcGUagCGCa -3'
miRNA:   3'- -CAGC-UUCAUCGCGaCG-GUCauCA--GCG- -5'
17136 5' -53.1 NC_004333.2 + 46777 0.67 0.689114
Target:  5'- gGUCGAccggcagcuuuuuGUAGCGCgccGCCAGUucgguauuGGUCGg -3'
miRNA:   3'- -CAGCUu------------CAUCGCGa--CGGUCA--------UCAGCg -5'
17136 5' -53.1 NC_004333.2 + 7904 0.68 0.648525
Target:  5'- --aGAAGUacgacuGGCGUUGCgGGUAGUUGa -3'
miRNA:   3'- cagCUUCA------UCGCGACGgUCAUCAGCg -5'
17136 5' -53.1 NC_004333.2 + 47287 0.68 0.648525
Target:  5'- cUCGaAAGUAGCGC-GCCc---GUCGCg -3'
miRNA:   3'- cAGC-UUCAUCGCGaCGGucauCAGCG- -5'
17136 5' -53.1 NC_004333.2 + 26044 0.69 0.625852
Target:  5'- aUCGAcGGU-GCGCcggauuUGCCAGUGG-CGCc -3'
miRNA:   3'- cAGCU-UCAuCGCG------ACGGUCAUCaGCG- -5'
17136 5' -53.1 NC_004333.2 + 25335 0.69 0.614518
Target:  5'- -aCGuaacGGUcGCGUUGCCGGUcGUUGCg -3'
miRNA:   3'- caGCu---UCAuCGCGACGGUCAuCAGCG- -5'
17136 5' -53.1 NC_004333.2 + 20322 0.7 0.514377
Target:  5'- aGUCGAuGUgcGGCGCgauguagGCCAGUcgcGGUCGa -3'
miRNA:   3'- -CAGCUuCA--UCGCGa------CGGUCA---UCAGCg -5'
17136 5' -53.1 NC_004333.2 + 25654 0.72 0.431336
Target:  5'- gGUCGAA--AGCGUcuUGCCGGccGUCGCg -3'
miRNA:   3'- -CAGCUUcaUCGCG--ACGGUCauCAGCG- -5'
17136 5' -53.1 NC_004333.2 + 37296 0.74 0.339484
Target:  5'- uGUCGAAGgcGaCGCguuCCAGUcGGUCGCg -3'
miRNA:   3'- -CAGCUUCauC-GCGac-GGUCA-UCAGCG- -5'
17136 5' -53.1 NC_004333.2 + 40839 0.75 0.273942
Target:  5'- cGUCGAAGaGGCGCgcgccuucuggucGCCGGcgaUGGUCGCg -3'
miRNA:   3'- -CAGCUUCaUCGCGa------------CGGUC---AUCAGCG- -5'
17136 5' -53.1 NC_004333.2 + 11644 1.12 0.000747
Target:  5'- uGUCGAAGUAGCGCUGCCAGUAGUCGCg -3'
miRNA:   3'- -CAGCUUCAUCGCGACGGUCAUCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.