Results 1 - 19 of 19 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17136 | 5' | -53.1 | NC_004333.2 | + | 11644 | 1.12 | 0.000747 |
Target: 5'- uGUCGAAGUAGCGCUGCCAGUAGUCGCg -3' miRNA: 3'- -CAGCUUCAUCGCGACGGUCAUCAGCG- -5' |
|||||||
17136 | 5' | -53.1 | NC_004333.2 | + | 40839 | 0.75 | 0.273942 |
Target: 5'- cGUCGAAGaGGCGCgcgccuucuggucGCCGGcgaUGGUCGCg -3' miRNA: 3'- -CAGCUUCaUCGCGa------------CGGUC---AUCAGCG- -5' |
|||||||
17136 | 5' | -53.1 | NC_004333.2 | + | 37296 | 0.74 | 0.339484 |
Target: 5'- uGUCGAAGgcGaCGCguuCCAGUcGGUCGCg -3' miRNA: 3'- -CAGCUUCauC-GCGac-GGUCA-UCAGCG- -5' |
|||||||
17136 | 5' | -53.1 | NC_004333.2 | + | 25654 | 0.72 | 0.431336 |
Target: 5'- gGUCGAA--AGCGUcuUGCCGGccGUCGCg -3' miRNA: 3'- -CAGCUUcaUCGCG--ACGGUCauCAGCG- -5' |
|||||||
17136 | 5' | -53.1 | NC_004333.2 | + | 20322 | 0.7 | 0.514377 |
Target: 5'- aGUCGAuGUgcGGCGCgauguagGCCAGUcgcGGUCGa -3' miRNA: 3'- -CAGCUuCA--UCGCGa------CGGUCA---UCAGCg -5' |
|||||||
17136 | 5' | -53.1 | NC_004333.2 | + | 25335 | 0.69 | 0.614518 |
Target: 5'- -aCGuaacGGUcGCGUUGCCGGUcGUUGCg -3' miRNA: 3'- caGCu---UCAuCGCGACGGUCAuCAGCG- -5' |
|||||||
17136 | 5' | -53.1 | NC_004333.2 | + | 26044 | 0.69 | 0.625852 |
Target: 5'- aUCGAcGGU-GCGCcggauuUGCCAGUGG-CGCc -3' miRNA: 3'- cAGCU-UCAuCGCG------ACGGUCAUCaGCG- -5' |
|||||||
17136 | 5' | -53.1 | NC_004333.2 | + | 47287 | 0.68 | 0.648525 |
Target: 5'- cUCGaAAGUAGCGC-GCCc---GUCGCg -3' miRNA: 3'- cAGC-UUCAUCGCGaCGGucauCAGCG- -5' |
|||||||
17136 | 5' | -53.1 | NC_004333.2 | + | 7904 | 0.68 | 0.648525 |
Target: 5'- --aGAAGUacgacuGGCGUUGCgGGUAGUUGa -3' miRNA: 3'- cagCUUCA------UCGCGACGgUCAUCAGCg -5' |
|||||||
17136 | 5' | -53.1 | NC_004333.2 | + | 46777 | 0.67 | 0.689114 |
Target: 5'- gGUCGAccggcagcuuuuuGUAGCGCgccGCCAGUucgguauuGGUCGg -3' miRNA: 3'- -CAGCUu------------CAUCGCGa--CGGUCA--------UCAGCg -5' |
|||||||
17136 | 5' | -53.1 | NC_004333.2 | + | 19487 | 0.67 | 0.726764 |
Target: 5'- cGUCGcGGGUAGCGCgGCgUAGgcGUagCGCa -3' miRNA: 3'- -CAGC-UUCAUCGCGaCG-GUCauCA--GCG- -5' |
|||||||
17136 | 5' | -53.1 | NC_004333.2 | + | 46765 | 0.67 | 0.737638 |
Target: 5'- cGUCGAAGUGuccgccGCGCUGCuCGGcacGUCcaaGCg -3' miRNA: 3'- -CAGCUUCAU------CGCGACG-GUCau-CAG---CG- -5' |
|||||||
17136 | 5' | -53.1 | NC_004333.2 | + | 39018 | 0.67 | 0.737638 |
Target: 5'- -aUGAAGcGGCGaUUGCCGGUcgcGUCGUg -3' miRNA: 3'- caGCUUCaUCGC-GACGGUCAu--CAGCG- -5' |
|||||||
17136 | 5' | -53.1 | NC_004333.2 | + | 20647 | 0.67 | 0.748401 |
Target: 5'- cGUCGcaacGGCGCUgcGCCAGUGGcaggaggCGCa -3' miRNA: 3'- -CAGCuucaUCGCGA--CGGUCAUCa------GCG- -5' |
|||||||
17136 | 5' | -53.1 | NC_004333.2 | + | 13926 | 0.66 | 0.779886 |
Target: 5'- -gCGAucGUGGcCGCUGCCGccagcGUGGcCGCc -3' miRNA: 3'- caGCUu-CAUC-GCGACGGU-----CAUCaGCG- -5' |
|||||||
17136 | 5' | -53.1 | NC_004333.2 | + | 36300 | 0.66 | 0.779886 |
Target: 5'- -gCGAuac-GCGCcGCCcgAGUAGUCGCc -3' miRNA: 3'- caGCUucauCGCGaCGG--UCAUCAGCG- -5' |
|||||||
17136 | 5' | -53.1 | NC_004333.2 | + | 26835 | 0.66 | 0.800084 |
Target: 5'- cGUCGuAGcgAGUGCUGUCGc--GUCGCg -3' miRNA: 3'- -CAGCuUCa-UCGCGACGGUcauCAGCG- -5' |
|||||||
17136 | 5' | -53.1 | NC_004333.2 | + | 29845 | 0.66 | 0.800084 |
Target: 5'- aGUCGAcugaucguucgcAGcgaAGCGC-GCgCGGUAGUCGUc -3' miRNA: 3'- -CAGCU------------UCa--UCGCGaCG-GUCAUCAGCG- -5' |
|||||||
17136 | 5' | -53.1 | NC_004333.2 | + | 41430 | 0.66 | 0.800084 |
Target: 5'- aUCGAAcaGGCGCUGCUcgacgcGGgcgAGUCGg -3' miRNA: 3'- cAGCUUcaUCGCGACGG------UCa--UCAGCg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home