Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17137 | 3' | -52.7 | NC_004333.2 | + | 39276 | 0.66 | 0.801948 |
Target: 5'- gGCCgacGGGaGCGCgGGCCGUGCUgccggUGCa -3' miRNA: 3'- -UGGaa-CUCaCGCG-CUGGUAUGA-----ACGc -5' |
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17137 | 3' | -52.7 | NC_004333.2 | + | 8717 | 0.66 | 0.791934 |
Target: 5'- cGCCgcucGAGUcCGCGAUCAU-CUUGCc -3' miRNA: 3'- -UGGaa--CUCAcGCGCUGGUAuGAACGc -5' |
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17137 | 3' | -52.7 | NC_004333.2 | + | 38277 | 0.67 | 0.760872 |
Target: 5'- uGCCUguucgacGAGaucgaugcacGCGCGACCGUGCacGCGg -3' miRNA: 3'- -UGGAa------CUCa---------CGCGCUGGUAUGaaCGC- -5' |
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17137 | 3' | -52.7 | NC_004333.2 | + | 19633 | 0.67 | 0.739438 |
Target: 5'- cCCUUGuGccGCGcCGACCGUGCgaccgGCGc -3' miRNA: 3'- uGGAACuCa-CGC-GCUGGUAUGaa---CGC- -5' |
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17137 | 3' | -52.7 | NC_004333.2 | + | 25198 | 0.67 | 0.717541 |
Target: 5'- gGCCgcGAacGUGCGCGccGCCGUGCUcGCc -3' miRNA: 3'- -UGGaaCU--CACGCGC--UGGUAUGAaCGc -5' |
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17137 | 3' | -52.7 | NC_004333.2 | + | 6829 | 0.68 | 0.695283 |
Target: 5'- uACCUcGAGgcGCGCGACCGggGCgccgugGCGc -3' miRNA: 3'- -UGGAaCUCa-CGCGCUGGUa-UGaa----CGC- -5' |
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17137 | 3' | -52.7 | NC_004333.2 | + | 11897 | 0.68 | 0.68405 |
Target: 5'- cACCUUGucGU-CGCGGCCcgGCaUGCGc -3' miRNA: 3'- -UGGAACu-CAcGCGCUGGuaUGaACGC- -5' |
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17137 | 3' | -52.7 | NC_004333.2 | + | 40938 | 0.69 | 0.638706 |
Target: 5'- uACC--GAGUcGCGCGACCAUcGCcgGCGa -3' miRNA: 3'- -UGGaaCUCA-CGCGCUGGUA-UGaaCGC- -5' |
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17137 | 3' | -52.7 | NC_004333.2 | + | 39057 | 0.69 | 0.638706 |
Target: 5'- aGCCggacggcGAGUacGCGCGACuCGUGCgccgUGCGu -3' miRNA: 3'- -UGGaa-----CUCA--CGCGCUG-GUAUGa---ACGC- -5' |
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17137 | 3' | -52.7 | NC_004333.2 | + | 11768 | 1.08 | 0.001684 |
Target: 5'- cACCUUGAGUGCGCGACCAUACUUGCGc -3' miRNA: 3'- -UGGAACUCACGCGCUGGUAUGAACGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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