miRNA display CGI


Results 61 - 80 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17137 5' -55.4 NC_004333.2 + 13532 0.67 0.607518
Target:  5'- uGCGCAuucGCGACGCGGugcgcacgaCCGUCAu- -3'
miRNA:   3'- uCGCGUucaUGCUGCGCC---------GGUAGUcg -5'
17137 5' -55.4 NC_004333.2 + 22945 0.67 0.607518
Target:  5'- gAGCGCcAGUACGAuCGC-GCCgAUC-GCc -3'
miRNA:   3'- -UCGCGuUCAUGCU-GCGcCGG-UAGuCG- -5'
17137 5' -55.4 NC_004333.2 + 9703 0.67 0.61864
Target:  5'- gGGCGCAGGcGCGcCGCcGGCagcCGGUg -3'
miRNA:   3'- -UCGCGUUCaUGCuGCG-CCGguaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 14873 0.67 0.61864
Target:  5'- cGCGCGcGUGCGGCGaaagauggaaGGCCAaccgaauuUCAcGCu -3'
miRNA:   3'- uCGCGUuCAUGCUGCg---------CCGGU--------AGU-CG- -5'
17137 5' -55.4 NC_004333.2 + 11901 0.67 0.61864
Target:  5'- cGGCGCAAGcUGgaGCGCG-CCGUCGcGCu -3'
miRNA:   3'- -UCGCGUUC-AUgcUGCGCcGGUAGU-CG- -5'
17137 5' -55.4 NC_004333.2 + 21776 0.67 0.596418
Target:  5'- uGGCGCAcGUGCGcauagaGCGCgucgagcugcucGGCCGUCAu- -3'
miRNA:   3'- -UCGCGUuCAUGC------UGCG------------CCGGUAGUcg -5'
17137 5' -55.4 NC_004333.2 + 39757 0.67 0.596418
Target:  5'- uGGCGCAGGcaggcCGACcaggaaGCGcGCCGccUCGGCg -3'
miRNA:   3'- -UCGCGUUCau---GCUG------CGC-CGGU--AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 8084 0.67 0.585348
Target:  5'- aGGCGacuGG-ACGACGCuGGUCG-CGGCg -3'
miRNA:   3'- -UCGCgu-UCaUGCUGCG-CCGGUaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 9802 0.67 0.585348
Target:  5'- cGGCGCucauGUcgcCGACGCGGCguUUcGCg -3'
miRNA:   3'- -UCGCGuu--CAu--GCUGCGCCGguAGuCG- -5'
17137 5' -55.4 NC_004333.2 + 38516 0.67 0.574319
Target:  5'- cGCGCcacggaucgacaAAGUuCGACGCGGCa---AGCg -3'
miRNA:   3'- uCGCG------------UUCAuGCUGCGCCGguagUCG- -5'
17137 5' -55.4 NC_004333.2 + 30247 0.67 0.574319
Target:  5'- uGCGCGAGUcCGACuuGguGCCcUCGGCg -3'
miRNA:   3'- uCGCGUUCAuGCUGcgC--CGGuAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 17090 0.67 0.596418
Target:  5'- cAGCGUgcacGAGU-CGAgCGCGGCgA-CGGCg -3'
miRNA:   3'- -UCGCG----UUCAuGCU-GCGCCGgUaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 16829 0.67 0.615302
Target:  5'- aAGCGUucGUaucgcucgagcagcGCGuCGCGGCCAa-GGCg -3'
miRNA:   3'- -UCGCGuuCA--------------UGCuGCGCCGGUagUCG- -5'
17137 5' -55.4 NC_004333.2 + 44960 0.67 0.607518
Target:  5'- uGCGCGcGcACGuCgGCGGCCGacugCAGCa -3'
miRNA:   3'- uCGCGUuCaUGCuG-CGCCGGUa---GUCG- -5'
17137 5' -55.4 NC_004333.2 + 8223 0.67 0.607518
Target:  5'- cGCgGCAGG-AUGACGcCGGCCcgC-GCg -3'
miRNA:   3'- uCG-CGUUCaUGCUGC-GCCGGuaGuCG- -5'
17137 5' -55.4 NC_004333.2 + 10959 0.68 0.505213
Target:  5'- cGGCGCAAGUgacugucGCGccggcguucuucccGCGCGG-CGUCAaGCg -3'
miRNA:   3'- -UCGCGUUCA-------UGC--------------UGCGCCgGUAGU-CG- -5'
17137 5' -55.4 NC_004333.2 + 44938 0.68 0.509436
Target:  5'- cGgGCAGGUuguCGcGCGCGGCgAucuucuUCAGCg -3'
miRNA:   3'- uCgCGUUCAu--GC-UGCGCCGgU------AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 25256 0.68 0.520059
Target:  5'- cGCGCAgcgAGUucgaGACGCGGCgGcaGGCg -3'
miRNA:   3'- uCGCGU---UCAug--CUGCGCCGgUagUCG- -5'
17137 5' -55.4 NC_004333.2 + 47846 0.68 0.541554
Target:  5'- -cUGCAGGUAuuCGAgCGCGGCgAUguGCu -3'
miRNA:   3'- ucGCGUUCAU--GCU-GCGCCGgUAguCG- -5'
17137 5' -55.4 NC_004333.2 + 29862 0.68 0.552414
Target:  5'- cAGCG-AAGcGCG-CGCGGUaguCGUCGGCg -3'
miRNA:   3'- -UCGCgUUCaUGCuGCGCCG---GUAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.