miRNA display CGI


Results 81 - 100 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17137 5' -55.4 NC_004333.2 + 11334 0.68 0.541554
Target:  5'- cGCGCGAugaagGCGGCGCGGuUCGUCGu- -3'
miRNA:   3'- uCGCGUUca---UGCUGCGCC-GGUAGUcg -5'
17137 5' -55.4 NC_004333.2 + 5058 0.68 0.530767
Target:  5'- uGGC-CGAcGU-CGGCGCGGCgcugaacagCGUCAGCa -3'
miRNA:   3'- -UCGcGUU-CAuGCUGCGCCG---------GUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 19956 0.68 0.529692
Target:  5'- cGcCGCGAGUGCuuugcccGACuGCGcGCUGUCGGCc -3'
miRNA:   3'- uC-GCGUUCAUG-------CUG-CGC-CGGUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 21210 0.68 0.509436
Target:  5'- uGCGCAucaAUGG-GCGGCCGUCGcGCg -3'
miRNA:   3'- uCGCGUucaUGCUgCGCCGGUAGU-CG- -5'
17137 5' -55.4 NC_004333.2 + 47846 0.68 0.541554
Target:  5'- -cUGCAGGUAuuCGAgCGCGGCgAUguGCu -3'
miRNA:   3'- ucGCGUUCAU--GCU-GCGCCGgUAguCG- -5'
17137 5' -55.4 NC_004333.2 + 10959 0.68 0.505213
Target:  5'- cGGCGCAAGUgacugucGCGccggcguucuucccGCGCGG-CGUCAaGCg -3'
miRNA:   3'- -UCGCGUUCA-------UGC--------------UGCGCCgGUAGU-CG- -5'
17137 5' -55.4 NC_004333.2 + 44938 0.68 0.509436
Target:  5'- cGgGCAGGUuguCGcGCGCGGCgAucuucuUCAGCg -3'
miRNA:   3'- uCgCGUUCAu--GC-UGCGCCGgU------AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 25256 0.68 0.520059
Target:  5'- cGCGCAgcgAGUucgaGACGCGGCgGcaGGCg -3'
miRNA:   3'- uCGCGU---UCAug--CUGCGCCGgUagUCG- -5'
17137 5' -55.4 NC_004333.2 + 2109 0.68 0.558961
Target:  5'- cGCGCGGGcgucgacgugauCGAUGCGGCCgugacGUCGGg -3'
miRNA:   3'- uCGCGUUCau----------GCUGCGCCGG-----UAGUCg -5'
17137 5' -55.4 NC_004333.2 + 13754 0.68 0.552414
Target:  5'- cGCGUAGG-ACGcCGCGcGCCGcucgcgCGGCg -3'
miRNA:   3'- uCGCGUUCaUGCuGCGC-CGGUa-----GUCG- -5'
17137 5' -55.4 NC_004333.2 + 29862 0.68 0.552414
Target:  5'- cAGCG-AAGcGCG-CGCGGUaguCGUCGGCg -3'
miRNA:   3'- -UCGCgUUCaUGCuGCGCCG---GUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 15524 0.68 0.541554
Target:  5'- cGCGuCAAGcGCGAUguuaGCGGgCAUCgAGCa -3'
miRNA:   3'- uCGC-GUUCaUGCUG----CGCCgGUAG-UCG- -5'
17137 5' -55.4 NC_004333.2 + 47946 0.68 0.541554
Target:  5'- --gGCAAGcugcuCGGCGCgcuGGUCGUCGGCg -3'
miRNA:   3'- ucgCGUUCau---GCUGCG---CCGGUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 42012 0.68 0.509436
Target:  5'- cGGUGCGcGUgaaGCG-CGCGGCCAaCgAGCg -3'
miRNA:   3'- -UCGCGUuCA---UGCuGCGCCGGUaG-UCG- -5'
17137 5' -55.4 NC_004333.2 + 18893 0.68 0.561148
Target:  5'- cGCGCGGGcuuCGAuagcagcacgcgcccUGCGGCCGcgcgauaagcgcgguUCAGCg -3'
miRNA:   3'- uCGCGUUCau-GCU---------------GCGCCGGU---------------AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 36345 0.69 0.464881
Target:  5'- uGGCGCAGG-ACGuCGCGuGUCGcugcaugucguggcUCGGCg -3'
miRNA:   3'- -UCGCGUUCaUGCuGCGC-CGGU--------------AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 28411 0.69 0.467926
Target:  5'- cGGCGCGauGGUACGAUGC-GCauguUCGGUg -3'
miRNA:   3'- -UCGCGU--UCAUGCUGCGcCGgu--AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 20844 0.69 0.478145
Target:  5'- gAGCGCAGGcguguCGACGUucaGGCgcgcagccgCGUCGGCg -3'
miRNA:   3'- -UCGCGUUCau---GCUGCG---CCG---------GUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 30499 0.69 0.502055
Target:  5'- uGGCGCGAGgcagucgcUACGGCGCGcgaauucgguccggcGCCGgucgcuucgacguUCGGCa -3'
miRNA:   3'- -UCGCGUUC--------AUGCUGCGC---------------CGGU-------------AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 28827 0.69 0.498906
Target:  5'- cGCGC-GGU-CGACGCGGCgcUCGcGCa -3'
miRNA:   3'- uCGCGuUCAuGCUGCGCCGguAGU-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.