miRNA display CGI


Results 41 - 60 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17137 5' -55.4 NC_004333.2 + 5128 0.72 0.346676
Target:  5'- cAGCGCcgcgcCGACGuCGGCCAaCAGCc -3'
miRNA:   3'- -UCGCGuucauGCUGC-GCCGGUaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 2431 0.71 0.355169
Target:  5'- cAGCGUgccuuGGUACGGCGCGGCgAaCAccuGCg -3'
miRNA:   3'- -UCGCGu----UCAUGCUGCGCCGgUaGU---CG- -5'
17137 5' -55.4 NC_004333.2 + 45128 0.71 0.355169
Target:  5'- gGGCGCG---GCcGCGCGGUguUCAGCg -3'
miRNA:   3'- -UCGCGUucaUGcUGCGCCGguAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 28775 0.71 0.355169
Target:  5'- cGCGCGGGUcgcgGCGGCGCGacuucCCAUC-GCg -3'
miRNA:   3'- uCGCGUUCA----UGCUGCGCc----GGUAGuCG- -5'
17137 5' -55.4 NC_004333.2 + 15092 0.71 0.363807
Target:  5'- aGGUgGCGAGUuucGCGGCGuCGGC-GUCGGCg -3'
miRNA:   3'- -UCG-CGUUCA---UGCUGC-GCCGgUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 25522 0.71 0.372589
Target:  5'- gAGCGCGucuuGGUACG-CGCcGCUcgagGUCAGCg -3'
miRNA:   3'- -UCGCGU----UCAUGCuGCGcCGG----UAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 11888 0.71 0.372589
Target:  5'- gGGCGCGAGcaccuuguCGuCGCGGCC--CGGCa -3'
miRNA:   3'- -UCGCGUUCau------GCuGCGCCGGuaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 43707 0.71 0.381515
Target:  5'- uGGUGCAGGccgGACGCacgGGCCGUgAGCu -3'
miRNA:   3'- -UCGCGUUCaugCUGCG---CCGGUAgUCG- -5'
17137 5' -55.4 NC_004333.2 + 36189 0.71 0.389669
Target:  5'- cGCGCAGGccgucgccaaccuUGCGuACGUGGCUGgcgcgCAGCg -3'
miRNA:   3'- uCGCGUUC-------------AUGC-UGCGCCGGUa----GUCG- -5'
17137 5' -55.4 NC_004333.2 + 25938 0.71 0.390582
Target:  5'- uGCGCGcGGcGCGAUgccgGCGGCCAguacgCGGCg -3'
miRNA:   3'- uCGCGU-UCaUGCUG----CGCCGGUa----GUCG- -5'
17137 5' -55.4 NC_004333.2 + 40740 0.7 0.399789
Target:  5'- cGGuCGCGAGUGCGcCGaacaguucguCGGCCGcuUCGGCc -3'
miRNA:   3'- -UC-GCGUUCAUGCuGC----------GCCGGU--AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 19733 0.7 0.399789
Target:  5'- cGUGCAAG-ACGGCGCcgcuGCCGUCAacgacGCg -3'
miRNA:   3'- uCGCGUUCaUGCUGCGc---CGGUAGU-----CG- -5'
17137 5' -55.4 NC_004333.2 + 46665 0.7 0.409133
Target:  5'- gGGCGuCAAGUACu-CGUcaguacuaaGGCUAUCAGCc -3'
miRNA:   3'- -UCGC-GUUCAUGcuGCG---------CCGGUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 41437 0.7 0.409133
Target:  5'- aGGCGCugcu-CGACGCGGgCgaGUCGGCc -3'
miRNA:   3'- -UCGCGuucauGCUGCGCCgG--UAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 19478 0.7 0.418613
Target:  5'- uAGCGCGGcGUA-GGCGUaGCgCAUCAGCa -3'
miRNA:   3'- -UCGCGUU-CAUgCUGCGcCG-GUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 20638 0.7 0.418613
Target:  5'- cGGCGCGAcc-CGACGCG-CCGacgaUCAGCg -3'
miRNA:   3'- -UCGCGUUcauGCUGCGCcGGU----AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 45990 0.7 0.418613
Target:  5'- cGCGCA------ACGCGGCCAgcUCGGCa -3'
miRNA:   3'- uCGCGUucaugcUGCGCCGGU--AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 19502 0.7 0.418613
Target:  5'- uGGCGCGcugGCGGCGCucguGGCCGUaugGGCa -3'
miRNA:   3'- -UCGCGUucaUGCUGCG----CCGGUAg--UCG- -5'
17137 5' -55.4 NC_004333.2 + 32751 0.7 0.418613
Target:  5'- cGCGCAGGU-CGcugcCGcCGGCCAUaAGCg -3'
miRNA:   3'- uCGCGUUCAuGCu---GC-GCCGGUAgUCG- -5'
17137 5' -55.4 NC_004333.2 + 23048 0.7 0.428224
Target:  5'- cGGCGaCcGGUaccGCGACGCuGCCggCGGCg -3'
miRNA:   3'- -UCGC-GuUCA---UGCUGCGcCGGuaGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.