Results 101 - 120 of 175 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
17137 | 5' | -55.4 | NC_004333.2 | + | 30247 | 0.67 | 0.574319 |
Target: 5'- uGCGCGAGUcCGACuuGguGCCcUCGGCg -3' miRNA: 3'- uCGCGUUCAuGCUGcgC--CGGuAGUCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 38516 | 0.67 | 0.574319 |
Target: 5'- cGCGCcacggaucgacaAAGUuCGACGCGGCa---AGCg -3' miRNA: 3'- uCGCG------------UUCAuGCUGCGCCGguagUCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 3533 | 0.67 | 0.578725 |
Target: 5'- cGGCGUAaagcgggaucaacgcGGUGCcGCGCaGCgCGUCGGCc -3' miRNA: 3'- -UCGCGU---------------UCAUGcUGCGcCG-GUAGUCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 20181 | 0.67 | 0.582035 |
Target: 5'- gGGCGCAcacaagaaggcggcAGUAaugGGCGCGGCUcgC-GCu -3' miRNA: 3'- -UCGCGU--------------UCAUg--CUGCGCCGGuaGuCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 4673 | 0.67 | 0.585348 |
Target: 5'- cGCGCGGGUcuuucuucAgGAU-CGaGCCAUCGGCg -3' miRNA: 3'- uCGCGUUCA--------UgCUGcGC-CGGUAGUCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 9802 | 0.67 | 0.585348 |
Target: 5'- cGGCGCucauGUcgcCGACGCGGCguUUcGCg -3' miRNA: 3'- -UCGCGuu--CAu--GCUGCGCCGguAGuCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 8084 | 0.67 | 0.585348 |
Target: 5'- aGGCGacuGG-ACGACGCuGGUCG-CGGCg -3' miRNA: 3'- -UCGCgu-UCaUGCUGCG-CCGGUaGUCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 45441 | 0.67 | 0.585348 |
Target: 5'- cGGCGCAuucGCGAgcaugGCGGCCAacuaCGGCg -3' miRNA: 3'- -UCGCGUucaUGCUg----CGCCGGUa---GUCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 2270 | 0.67 | 0.585348 |
Target: 5'- gAGCGCA---GCG-CGUuuGCCGUCGGCa -3' miRNA: 3'- -UCGCGUucaUGCuGCGc-CGGUAGUCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 11212 | 0.67 | 0.585348 |
Target: 5'- cGCGCAcGUGauucgGGCGCGGCUccuugcCGGCg -3' miRNA: 3'- uCGCGUuCAUg----CUGCGCCGGua----GUCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 8988 | 0.67 | 0.585348 |
Target: 5'- uGCGCGGcGgcgacCGACGCGGCguUCgcGGCu -3' miRNA: 3'- uCGCGUU-Cau---GCUGCGCCGguAG--UCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 39757 | 0.67 | 0.596418 |
Target: 5'- uGGCGCAGGcaggcCGACcaggaaGCGcGCCGccUCGGCg -3' miRNA: 3'- -UCGCGUUCau---GCUG------CGC-CGGU--AGUCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 17090 | 0.67 | 0.596418 |
Target: 5'- cAGCGUgcacGAGU-CGAgCGCGGCgA-CGGCg -3' miRNA: 3'- -UCGCG----UUCAuGCU-GCGCCGgUaGUCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 21776 | 0.67 | 0.596418 |
Target: 5'- uGGCGCAcGUGCGcauagaGCGCgucgagcugcucGGCCGUCAu- -3' miRNA: 3'- -UCGCGUuCAUGC------UGCG------------CCGGUAGUcg -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 40782 | 0.67 | 0.596418 |
Target: 5'- cGcCGCcGGUgACGAuCGCGGCgAUCGGg -3' miRNA: 3'- uC-GCGuUCA-UGCU-GCGCCGgUAGUCg -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 29805 | 0.67 | 0.596418 |
Target: 5'- cGGCGUGcAGaACuACGCGaGCgGUCAGCg -3' miRNA: 3'- -UCGCGU-UCaUGcUGCGC-CGgUAGUCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 31702 | 0.67 | 0.596418 |
Target: 5'- cGGC-CGAcuGUucACGcGCGCGGCCA-CAGCg -3' miRNA: 3'- -UCGcGUU--CA--UGC-UGCGCCGGUaGUCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 21075 | 0.67 | 0.606407 |
Target: 5'- gGGCGCcaacuaUGCGACGUGcggcuucacgaacGCCGUCGGUc -3' miRNA: 3'- -UCGCGuuc---AUGCUGCGC-------------CGGUAGUCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 36824 | 0.67 | 0.607518 |
Target: 5'- cGUGCGAGUgACGGauCGGCUAUCuGUc -3' miRNA: 3'- uCGCGUUCA-UGCUgcGCCGGUAGuCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 35378 | 0.67 | 0.607518 |
Target: 5'- gAGUGCAGuaACGGCgGCGGCCAcCAu- -3' miRNA: 3'- -UCGCGUUcaUGCUG-CGCCGGUaGUcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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