miRNA display CGI


Results 121 - 140 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17137 5' -55.4 NC_004333.2 + 8633 0.67 0.607518
Target:  5'- uGCGCGAcGUcgagcuCGGCGCGGCgccCGGCu -3'
miRNA:   3'- uCGCGUU-CAu-----GCUGCGCCGguaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 35378 0.67 0.607518
Target:  5'- gAGUGCAGuaACGGCgGCGGCCAcCAu- -3'
miRNA:   3'- -UCGCGUUcaUGCUG-CGCCGGUaGUcg -5'
17137 5' -55.4 NC_004333.2 + 13532 0.67 0.607518
Target:  5'- uGCGCAuucGCGACGCGGugcgcacgaCCGUCAu- -3'
miRNA:   3'- uCGCGUucaUGCUGCGCC---------GGUAGUcg -5'
17137 5' -55.4 NC_004333.2 + 22945 0.67 0.607518
Target:  5'- gAGCGCcAGUACGAuCGC-GCCgAUC-GCc -3'
miRNA:   3'- -UCGCGuUCAUGCU-GCGcCGG-UAGuCG- -5'
17137 5' -55.4 NC_004333.2 + 36824 0.67 0.607518
Target:  5'- cGUGCGAGUgACGGauCGGCUAUCuGUc -3'
miRNA:   3'- uCGCGUUCA-UGCUgcGCCGGUAGuCG- -5'
17137 5' -55.4 NC_004333.2 + 44960 0.67 0.607518
Target:  5'- uGCGCGcGcACGuCgGCGGCCGacugCAGCa -3'
miRNA:   3'- uCGCGUuCaUGCuG-CGCCGGUa---GUCG- -5'
17137 5' -55.4 NC_004333.2 + 14695 0.67 0.607518
Target:  5'- gAGUGCAGGUGUGGCacgaGUGcGCCAagCGGCa -3'
miRNA:   3'- -UCGCGUUCAUGCUG----CGC-CGGUa-GUCG- -5'
17137 5' -55.4 NC_004333.2 + 16829 0.67 0.615302
Target:  5'- aAGCGUucGUaucgcucgagcagcGCGuCGCGGCCAa-GGCg -3'
miRNA:   3'- -UCGCGuuCA--------------UGCuGCGCCGGUagUCG- -5'
17137 5' -55.4 NC_004333.2 + 21706 0.67 0.61864
Target:  5'- cGCGCucuaUGCGcACGUGcGCCAgCAGCu -3'
miRNA:   3'- uCGCGuuc-AUGC-UGCGC-CGGUaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 47693 0.67 0.61864
Target:  5'- aGGCG-AAGUACGACGaaGCguUCAcGCu -3'
miRNA:   3'- -UCGCgUUCAUGCUGCgcCGguAGU-CG- -5'
17137 5' -55.4 NC_004333.2 + 15182 0.67 0.61864
Target:  5'- uGCGUAGGUcGCGuuCGCaauccgcacGGCCggCAGCa -3'
miRNA:   3'- uCGCGUUCA-UGCu-GCG---------CCGGuaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 9703 0.67 0.61864
Target:  5'- gGGCGCAGGcGCGcCGCcGGCagcCGGUg -3'
miRNA:   3'- -UCGCGUUCaUGCuGCG-CCGguaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 14873 0.67 0.61864
Target:  5'- cGCGCGcGUGCGGCGaaagauggaaGGCCAaccgaauuUCAcGCu -3'
miRNA:   3'- uCGCGUuCAUGCUGCg---------CCGGU--------AGU-CG- -5'
17137 5' -55.4 NC_004333.2 + 11901 0.67 0.61864
Target:  5'- cGGCGCAAGcUGgaGCGCG-CCGUCGcGCu -3'
miRNA:   3'- -UCGCGUUC-AUgcUGCGCcGGUAGU-CG- -5'
17137 5' -55.4 NC_004333.2 + 8702 0.66 0.629775
Target:  5'- cGCGcCGAGcuCGACGUcGCgCAUCGGCu -3'
miRNA:   3'- uCGC-GUUCauGCUGCGcCG-GUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 32608 0.66 0.629775
Target:  5'- cGaCGCGAGcGCGcCGCGcGaCGUCGGCa -3'
miRNA:   3'- uC-GCGUUCaUGCuGCGC-CgGUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 29258 0.66 0.629775
Target:  5'- uGCGCGGGUuCGugcaGCGGCCcgacCAGUc -3'
miRNA:   3'- uCGCGUUCAuGCug--CGCCGGua--GUCG- -5'
17137 5' -55.4 NC_004333.2 + 9896 0.66 0.629775
Target:  5'- uGCGCucagGCGACGCGGaCGggcaGGCa -3'
miRNA:   3'- uCGCGuucaUGCUGCGCCgGUag--UCG- -5'
17137 5' -55.4 NC_004333.2 + 30294 0.66 0.629775
Target:  5'- cGCGCGGcGcGCGAUcgaucaggcaGCGGCUAUCAcgGCa -3'
miRNA:   3'- uCGCGUU-CaUGCUG----------CGCCGGUAGU--CG- -5'
17137 5' -55.4 NC_004333.2 + 33673 0.66 0.640911
Target:  5'- gAGCGUAucUGCGACaugggacaGCGGCU-UCGGCu -3'
miRNA:   3'- -UCGCGUucAUGCUG--------CGCCGGuAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.