miRNA display CGI


Results 61 - 80 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17137 5' -55.4 NC_004333.2 + 31702 0.67 0.596418
Target:  5'- cGGC-CGAcuGUucACGcGCGCGGCCA-CAGCg -3'
miRNA:   3'- -UCGcGUU--CA--UGC-UGCGCCGGUaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 40782 0.67 0.596418
Target:  5'- cGcCGCcGGUgACGAuCGCGGCgAUCGGg -3'
miRNA:   3'- uC-GCGuUCA-UGCU-GCGCCGgUAGUCg -5'
17137 5' -55.4 NC_004333.2 + 21776 0.67 0.596418
Target:  5'- uGGCGCAcGUGCGcauagaGCGCgucgagcugcucGGCCGUCAu- -3'
miRNA:   3'- -UCGCGUuCAUGC------UGCG------------CCGGUAGUcg -5'
17137 5' -55.4 NC_004333.2 + 17090 0.67 0.596418
Target:  5'- cAGCGUgcacGAGU-CGAgCGCGGCgA-CGGCg -3'
miRNA:   3'- -UCGCG----UUCAuGCU-GCGCCGgUaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 2270 0.67 0.585348
Target:  5'- gAGCGCA---GCG-CGUuuGCCGUCGGCa -3'
miRNA:   3'- -UCGCGUucaUGCuGCGc-CGGUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 8084 0.67 0.585348
Target:  5'- aGGCGacuGG-ACGACGCuGGUCG-CGGCg -3'
miRNA:   3'- -UCGCgu-UCaUGCUGCG-CCGGUaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 4673 0.67 0.585348
Target:  5'- cGCGCGGGUcuuucuucAgGAU-CGaGCCAUCGGCg -3'
miRNA:   3'- uCGCGUUCA--------UgCUGcGC-CGGUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 9802 0.67 0.585348
Target:  5'- cGGCGCucauGUcgcCGACGCGGCguUUcGCg -3'
miRNA:   3'- -UCGCGuu--CAu--GCUGCGCCGguAGuCG- -5'
17137 5' -55.4 NC_004333.2 + 8988 0.67 0.585348
Target:  5'- uGCGCGGcGgcgacCGACGCGGCguUCgcGGCu -3'
miRNA:   3'- uCGCGUU-Cau---GCUGCGCCGguAG--UCG- -5'
17137 5' -55.4 NC_004333.2 + 11212 0.67 0.585348
Target:  5'- cGCGCAcGUGauucgGGCGCGGCUccuugcCGGCg -3'
miRNA:   3'- uCGCGUuCAUg----CUGCGCCGGua----GUCG- -5'
17137 5' -55.4 NC_004333.2 + 45441 0.67 0.585348
Target:  5'- cGGCGCAuucGCGAgcaugGCGGCCAacuaCGGCg -3'
miRNA:   3'- -UCGCGUucaUGCUg----CGCCGGUa---GUCG- -5'
17137 5' -55.4 NC_004333.2 + 20181 0.67 0.582035
Target:  5'- gGGCGCAcacaagaaggcggcAGUAaugGGCGCGGCUcgC-GCu -3'
miRNA:   3'- -UCGCGU--------------UCAUg--CUGCGCCGGuaGuCG- -5'
17137 5' -55.4 NC_004333.2 + 3533 0.67 0.578725
Target:  5'- cGGCGUAaagcgggaucaacgcGGUGCcGCGCaGCgCGUCGGCc -3'
miRNA:   3'- -UCGCGU---------------UCAUGcUGCGcCG-GUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 38516 0.67 0.574319
Target:  5'- cGCGCcacggaucgacaAAGUuCGACGCGGCa---AGCg -3'
miRNA:   3'- uCGCG------------UUCAuGCUGCGCCGguagUCG- -5'
17137 5' -55.4 NC_004333.2 + 30247 0.67 0.574319
Target:  5'- uGCGCGAGUcCGACuuGguGCCcUCGGCg -3'
miRNA:   3'- uCGCGUUCAuGCUGcgC--CGGuAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 2358 0.68 0.563338
Target:  5'- uGCGCAgcuggaAGUugauCGACGCGGCg--UAGCc -3'
miRNA:   3'- uCGCGU------UCAu---GCUGCGCCGguaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 40074 0.68 0.563338
Target:  5'- cGGCgGCAAGaaccGCGAuaucacgauccaUGCGGCCAaggCGGCa -3'
miRNA:   3'- -UCG-CGUUCa---UGCU------------GCGCCGGUa--GUCG- -5'
17137 5' -55.4 NC_004333.2 + 18893 0.68 0.561148
Target:  5'- cGCGCGGGcuuCGAuagcagcacgcgcccUGCGGCCGcgcgauaagcgcgguUCAGCg -3'
miRNA:   3'- uCGCGUUCau-GCU---------------GCGCCGGU---------------AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 2109 0.68 0.558961
Target:  5'- cGCGCGGGcgucgacgugauCGAUGCGGCCgugacGUCGGg -3'
miRNA:   3'- uCGCGUUCau----------GCUGCGCCGG-----UAGUCg -5'
17137 5' -55.4 NC_004333.2 + 13754 0.68 0.552414
Target:  5'- cGCGUAGG-ACGcCGCGcGCCGcucgcgCGGCg -3'
miRNA:   3'- uCGCGUUCaUGCuGCGC-CGGUa-----GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.