Results 101 - 120 of 175 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17137 | 5' | -55.4 | NC_004333.2 | + | 29119 | 0.69 | 0.478145 |
Target: 5'- cGGCGCGAucGUggGCGGCGCGGUgcUCGcGCu -3' miRNA: 3'- -UCGCGUU--CA--UGCUGCGCCGguAGU-CG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 46996 | 0.69 | 0.478145 |
Target: 5'- cGCGCGAGgcuucgcgGCGcuCGCGGCgcugCAGCa -3' miRNA: 3'- uCGCGUUCa-------UGCu-GCGCCGgua-GUCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 37598 | 0.69 | 0.478145 |
Target: 5'- cAGCGCAccGGaACGAcugaucuucaCGUGGCCGUggcCGGCg -3' miRNA: 3'- -UCGCGU--UCaUGCU----------GCGCCGGUA---GUCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 20844 | 0.69 | 0.478145 |
Target: 5'- gAGCGCAGGcguguCGACGUucaGGCgcgcagccgCGUCGGCg -3' miRNA: 3'- -UCGCGUUCau---GCUGCG---CCG---------GUAGUCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 24190 | 0.69 | 0.478145 |
Target: 5'- cAGCGCGAaUGCGACGguacCGGCCGcCuGGCc -3' miRNA: 3'- -UCGCGUUcAUGCUGC----GCCGGUaG-UCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 5640 | 0.69 | 0.47098 |
Target: 5'- cGCGCAccaugccguuaccGGUuuucuucuucgacuCGACuGCGGCCAUguGCa -3' miRNA: 3'- uCGCGU-------------UCAu-------------GCUG-CGCCGGUAguCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 32134 | 0.69 | 0.467926 |
Target: 5'- aAGCGCcAGcACGucgaACGCGGCgacuGUCGGCa -3' miRNA: 3'- -UCGCGuUCaUGC----UGCGCCGg---UAGUCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 31115 | 0.69 | 0.467926 |
Target: 5'- cGGCGCGAGUugcugcucGCG-CGCGaGCC--CGGCg -3' miRNA: 3'- -UCGCGUUCA--------UGCuGCGC-CGGuaGUCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 28411 | 0.69 | 0.467926 |
Target: 5'- cGGCGCGauGGUACGAUGC-GCauguUCGGUg -3' miRNA: 3'- -UCGCGU--UCAUGCUGCGcCGgu--AGUCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 36345 | 0.69 | 0.464881 |
Target: 5'- uGGCGCAGG-ACGuCGCGuGUCGcugcaugucguggcUCGGCg -3' miRNA: 3'- -UCGCGUUCaUGCuGCGC-CGGU--------------AGUCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 30371 | 0.69 | 0.457819 |
Target: 5'- uGuCGCAGGcGCGACgGCGGCCAgcUC-GCc -3' miRNA: 3'- uC-GCGUUCaUGCUG-CGCCGGU--AGuCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 11920 | 0.7 | 0.437964 |
Target: 5'- uGCGCAGcgGCG-CGCGcGCCAUUAcGCg -3' miRNA: 3'- uCGCGUUcaUGCuGCGC-CGGUAGU-CG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 11844 | 0.7 | 0.437964 |
Target: 5'- gAGCGCAAGUAUGGuCGCgcacucaaGGUgaaCGUCGGUg -3' miRNA: 3'- -UCGCGUUCAUGCU-GCG--------CCG---GUAGUCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 6669 | 0.7 | 0.437964 |
Target: 5'- cGGCGCuGG-GCGGCGCG-CCGUggCGGCg -3' miRNA: 3'- -UCGCGuUCaUGCUGCGCcGGUA--GUCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 4954 | 0.7 | 0.428224 |
Target: 5'- cAGCGCGcgcuacauGGUcagcgGCGGCaGCGGC-AUCGGCa -3' miRNA: 3'- -UCGCGU--------UCA-----UGCUG-CGCCGgUAGUCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 23048 | 0.7 | 0.428224 |
Target: 5'- cGGCGaCcGGUaccGCGACGCuGCCggCGGCg -3' miRNA: 3'- -UCGC-GuUCA---UGCUGCGcCGGuaGUCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 20638 | 0.7 | 0.418613 |
Target: 5'- cGGCGCGAcc-CGACGCG-CCGacgaUCAGCg -3' miRNA: 3'- -UCGCGUUcauGCUGCGCcGGU----AGUCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 19478 | 0.7 | 0.418613 |
Target: 5'- uAGCGCGGcGUA-GGCGUaGCgCAUCAGCa -3' miRNA: 3'- -UCGCGUU-CAUgCUGCGcCG-GUAGUCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 19502 | 0.7 | 0.418613 |
Target: 5'- uGGCGCGcugGCGGCGCucguGGCCGUaugGGCa -3' miRNA: 3'- -UCGCGUucaUGCUGCG----CCGGUAg--UCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 32751 | 0.7 | 0.418613 |
Target: 5'- cGCGCAGGU-CGcugcCGcCGGCCAUaAGCg -3' miRNA: 3'- uCGCGUUCAuGCu---GC-GCCGGUAgUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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