miRNA display CGI


Results 41 - 60 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17137 5' -55.4 NC_004333.2 + 11974 0.72 0.314174
Target:  5'- cGCGCGucgACGAuCGCGGCCGUaucGCg -3'
miRNA:   3'- uCGCGUucaUGCU-GCGCCGGUAgu-CG- -5'
17137 5' -55.4 NC_004333.2 + 13352 0.66 0.674229
Target:  5'- cGGCaCGGuGUACgGGCGCGGCacgagCGGCg -3'
miRNA:   3'- -UCGcGUU-CAUG-CUGCGCCGgua--GUCG- -5'
17137 5' -55.4 NC_004333.2 + 13532 0.67 0.607518
Target:  5'- uGCGCAuucGCGACGCGGugcgcacgaCCGUCAu- -3'
miRNA:   3'- uCGCGUucaUGCUGCGCC---------GGUAGUcg -5'
17137 5' -55.4 NC_004333.2 + 13754 0.68 0.552414
Target:  5'- cGCGUAGG-ACGcCGCGcGCCGcucgcgCGGCg -3'
miRNA:   3'- uCGCGUUCaUGCuGCGC-CGGUa-----GUCG- -5'
17137 5' -55.4 NC_004333.2 + 13829 0.67 0.607518
Target:  5'- cGCGCGAGcgGCG-CGCGG-CGUCcuacGCg -3'
miRNA:   3'- uCGCGUUCa-UGCuGCGCCgGUAGu---CG- -5'
17137 5' -55.4 NC_004333.2 + 14695 0.67 0.607518
Target:  5'- gAGUGCAGGUGUGGCacgaGUGcGCCAagCGGCa -3'
miRNA:   3'- -UCGCGUUCAUGCUG----CGC-CGGUa-GUCG- -5'
17137 5' -55.4 NC_004333.2 + 14873 0.67 0.61864
Target:  5'- cGCGCGcGUGCGGCGaaagauggaaGGCCAaccgaauuUCAcGCu -3'
miRNA:   3'- uCGCGUuCAUGCUGCg---------CCGGU--------AGU-CG- -5'
17137 5' -55.4 NC_004333.2 + 15092 0.71 0.363807
Target:  5'- aGGUgGCGAGUuucGCGGCGuCGGC-GUCGGCg -3'
miRNA:   3'- -UCG-CGUUCA---UGCUGC-GCCGgUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 15182 0.67 0.61864
Target:  5'- uGCGUAGGUcGCGuuCGCaauccgcacGGCCggCAGCa -3'
miRNA:   3'- uCGCGUUCA-UGCu-GCG---------CCGGuaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 15280 0.76 0.17136
Target:  5'- cGUGCugcgGCGGCGCGGUCAgcaUCAGCa -3'
miRNA:   3'- uCGCGuucaUGCUGCGCCGGU---AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 15488 0.66 0.674229
Target:  5'- gAGCGCAacaGGgcUGcuCGCGGCgGUCAccgGCg -3'
miRNA:   3'- -UCGCGU---UCauGCu-GCGCCGgUAGU---CG- -5'
17137 5' -55.4 NC_004333.2 + 15524 0.68 0.541554
Target:  5'- cGCGuCAAGcGCGAUguuaGCGGgCAUCgAGCa -3'
miRNA:   3'- uCGC-GUUCaUGCUG----CGCCgGUAG-UCG- -5'
17137 5' -55.4 NC_004333.2 + 16829 0.67 0.615302
Target:  5'- aAGCGUucGUaucgcucgagcagcGCGuCGCGGCCAa-GGCg -3'
miRNA:   3'- -UCGCGuuCA--------------UGCuGCGCCGGUagUCG- -5'
17137 5' -55.4 NC_004333.2 + 17090 0.67 0.596418
Target:  5'- cAGCGUgcacGAGU-CGAgCGCGGCgA-CGGCg -3'
miRNA:   3'- -UCGCG----UUCAuGCU-GCGCCGgUaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 17601 0.72 0.346676
Target:  5'- uGCGCGaucgcuucggacAGUGCGAC-CGGCUG-CAGCa -3'
miRNA:   3'- uCGCGU------------UCAUGCUGcGCCGGUaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 18095 0.66 0.65204
Target:  5'- cAGCGCGuAGaacuCGGC-CGGCUucGUCGGCu -3'
miRNA:   3'- -UCGCGU-UCau--GCUGcGCCGG--UAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 18327 0.72 0.314174
Target:  5'- uGUGCAGGguucUGCGGauuagcaGCGuGCCGUCGGCg -3'
miRNA:   3'- uCGCGUUC----AUGCUg------CGC-CGGUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 18893 0.68 0.561148
Target:  5'- cGCGCGGGcuuCGAuagcagcacgcgcccUGCGGCCGcgcgauaagcgcgguUCAGCg -3'
miRNA:   3'- uCGCGUUCau-GCU---------------GCGCCGGU---------------AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 19478 0.7 0.418613
Target:  5'- uAGCGCGGcGUA-GGCGUaGCgCAUCAGCa -3'
miRNA:   3'- -UCGCGUU-CAUgCUGCGcCG-GUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 19502 0.7 0.418613
Target:  5'- uGGCGCGcugGCGGCGCucguGGCCGUaugGGCa -3'
miRNA:   3'- -UCGCGUucaUGCUGCG----CCGGUAg--UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.