miRNA display CGI


Results 81 - 100 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17137 5' -55.4 NC_004333.2 + 22771 0.66 0.674229
Target:  5'- aGGCGCAucuGUcAUGA-GUGGCaCGUCGGUu -3'
miRNA:   3'- -UCGCGUu--CA-UGCUgCGCCG-GUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 22873 0.66 0.674229
Target:  5'- cAGCGCGacgaacaccuGGUACGcaacgUGCGGCgCAUCGaacGCa -3'
miRNA:   3'- -UCGCGU----------UCAUGCu----GCGCCG-GUAGU---CG- -5'
17137 5' -55.4 NC_004333.2 + 22945 0.67 0.607518
Target:  5'- gAGCGCcAGUACGAuCGC-GCCgAUC-GCc -3'
miRNA:   3'- -UCGCGuUCAUGCU-GCGcCGG-UAGuCG- -5'
17137 5' -55.4 NC_004333.2 + 23048 0.7 0.428224
Target:  5'- cGGCGaCcGGUaccGCGACGCuGCCggCGGCg -3'
miRNA:   3'- -UCGC-GuUCA---UGCUGCGcCGGuaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 23487 0.66 0.674229
Target:  5'- cGGCgGCGGGUACG-UGCcgGGCUAcCAGUa -3'
miRNA:   3'- -UCG-CGUUCAUGCuGCG--CCGGUaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 23905 0.73 0.276862
Target:  5'- uGCGgAAGccgaACGGCGCGuaCGUCAGCg -3'
miRNA:   3'- uCGCgUUCa---UGCUGCGCcgGUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 24190 0.69 0.478145
Target:  5'- cAGCGCGAaUGCGACGguacCGGCCGcCuGGCc -3'
miRNA:   3'- -UCGCGUUcAUGCUGC----GCCGGUaG-UCG- -5'
17137 5' -55.4 NC_004333.2 + 25256 0.68 0.520059
Target:  5'- cGCGCAgcgAGUucgaGACGCGGCgGcaGGCg -3'
miRNA:   3'- uCGCGU---UCAug--CUGCGCCGgUagUCG- -5'
17137 5' -55.4 NC_004333.2 + 25409 0.72 0.306418
Target:  5'- gAGCGCGccugcagcGUGcCGGCgGCGGCCGUCAcGCc -3'
miRNA:   3'- -UCGCGUu-------CAU-GCUG-CGCCGGUAGU-CG- -5'
17137 5' -55.4 NC_004333.2 + 25522 0.71 0.372589
Target:  5'- gAGCGCGucuuGGUACG-CGCcGCUcgagGUCAGCg -3'
miRNA:   3'- -UCGCGU----UCAUGCuGCGcCGG----UAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 25938 0.71 0.390582
Target:  5'- uGCGCGcGGcGCGAUgccgGCGGCCAguacgCGGCg -3'
miRNA:   3'- uCGCGU-UCaUGCUG----CGCCGGUa----GUCG- -5'
17137 5' -55.4 NC_004333.2 + 25972 0.74 0.243173
Target:  5'- aAGCGCAGGgcgGCGaaGCGCGGCgcUUGGCg -3'
miRNA:   3'- -UCGCGUUCa--UGC--UGCGCCGguAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 26911 0.77 0.157289
Target:  5'- gAGCGCGAcgcgacagcacucGcUACGACGCugcaggccgGGCCGUCGGCa -3'
miRNA:   3'- -UCGCGUU-------------C-AUGCUGCG---------CCGGUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 27299 0.66 0.685268
Target:  5'- cGGCGaaaccgAUGAUGCGGCCA--GGCu -3'
miRNA:   3'- -UCGCguuca-UGCUGCGCCGGUagUCG- -5'
17137 5' -55.4 NC_004333.2 + 27478 0.73 0.284756
Target:  5'- cGCGCAGGguuacggcaaacaugACGGCaCGGCCGUCGcGCc -3'
miRNA:   3'- uCGCGUUCa--------------UGCUGcGCCGGUAGU-CG- -5'
17137 5' -55.4 NC_004333.2 + 27729 0.66 0.674229
Target:  5'- uGCGCGAucGCGGCGCGaaucUgGUCGGCc -3'
miRNA:   3'- uCGCGUUcaUGCUGCGCc---GgUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 27878 0.85 0.046991
Target:  5'- uGCGUucGAGUACGGCGgcaucacuuCGGCCAUCAGCg -3'
miRNA:   3'- uCGCG--UUCAUGCUGC---------GCCGGUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 28201 0.66 0.674229
Target:  5'- cGGCGCGcAGUACGgaaACGCGcGCguugagauuuUCGGCg -3'
miRNA:   3'- -UCGCGU-UCAUGC---UGCGC-CGgu--------AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 28411 0.69 0.467926
Target:  5'- cGGCGCGauGGUACGAUGC-GCauguUCGGUg -3'
miRNA:   3'- -UCGCGU--UCAUGCUGCGcCGgu--AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 28529 0.66 0.670909
Target:  5'- uGGCGCGcGUAacugGCGGCCcgacaaguacaugaAUCAGCg -3'
miRNA:   3'- -UCGCGUuCAUgcugCGCCGG--------------UAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.