miRNA display CGI


Results 21 - 40 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17137 5' -55.4 NC_004333.2 + 41437 0.7 0.409133
Target:  5'- aGGCGCugcu-CGACGCGGgCgaGUCGGCc -3'
miRNA:   3'- -UCGCGuucauGCUGCGCCgG--UAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 40862 0.66 0.663149
Target:  5'- cGGgGCGAGcgacAUGACGCGuGCCugCGGCc -3'
miRNA:   3'- -UCgCGUUCa---UGCUGCGC-CGGuaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 40782 0.67 0.596418
Target:  5'- cGcCGCcGGUgACGAuCGCGGCgAUCGGg -3'
miRNA:   3'- uC-GCGuUCA-UGCU-GCGCCGgUAGUCg -5'
17137 5' -55.4 NC_004333.2 + 40740 0.7 0.399789
Target:  5'- cGGuCGCGAGUGCGcCGaacaguucguCGGCCGcuUCGGCc -3'
miRNA:   3'- -UC-GCGUUCAUGCuGC----------GCCGGU--AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 40225 0.66 0.65204
Target:  5'- aAGUGC----GCGACGCGGCC---GGCc -3'
miRNA:   3'- -UCGCGuucaUGCUGCGCCGGuagUCG- -5'
17137 5' -55.4 NC_004333.2 + 40074 0.68 0.563338
Target:  5'- cGGCgGCAAGaaccGCGAuaucacgauccaUGCGGCCAaggCGGCa -3'
miRNA:   3'- -UCG-CGUUCa---UGCU------------GCGCCGGUa--GUCG- -5'
17137 5' -55.4 NC_004333.2 + 39757 0.67 0.596418
Target:  5'- uGGCGCAGGcaggcCGACcaggaaGCGcGCCGccUCGGCg -3'
miRNA:   3'- -UCGCGUUCau---GCUG------CGC-CGGU--AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 39331 0.66 0.674229
Target:  5'- cGCGCGcGUGCGccuGC-CGGCCGcUCGGg -3'
miRNA:   3'- uCGCGUuCAUGC---UGcGCCGGU-AGUCg -5'
17137 5' -55.4 NC_004333.2 + 39065 0.66 0.685268
Target:  5'- --gGCGAGUACG-CGCGacucgugcGCCgugcGUCGGCa -3'
miRNA:   3'- ucgCGUUCAUGCuGCGC--------CGG----UAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 38949 0.72 0.346676
Target:  5'- cGGCGCGGGUGCGcggacGgGCGGCguUCguauGGCg -3'
miRNA:   3'- -UCGCGUUCAUGC-----UgCGCCGguAG----UCG- -5'
17137 5' -55.4 NC_004333.2 + 38516 0.67 0.574319
Target:  5'- cGCGCcacggaucgacaAAGUuCGACGCGGCa---AGCg -3'
miRNA:   3'- uCGCG------------UUCAuGCUGCGCCGguagUCG- -5'
17137 5' -55.4 NC_004333.2 + 38301 0.72 0.322079
Target:  5'- cGCGCGAccGUGC-ACGCGGCgAcCGGCg -3'
miRNA:   3'- uCGCGUU--CAUGcUGCGCCGgUaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 38076 0.66 0.663149
Target:  5'- cGGCGCAcuggaAGccgaGCGACGCGGgCAgu-GCu -3'
miRNA:   3'- -UCGCGU-----UCa---UGCUGCGCCgGUaguCG- -5'
17137 5' -55.4 NC_004333.2 + 37598 0.69 0.478145
Target:  5'- cAGCGCAccGGaACGAcugaucuucaCGUGGCCGUggcCGGCg -3'
miRNA:   3'- -UCGCGU--UCaUGCU----------GCGCCGGUA---GUCG- -5'
17137 5' -55.4 NC_004333.2 + 36824 0.67 0.607518
Target:  5'- cGUGCGAGUgACGGauCGGCUAUCuGUc -3'
miRNA:   3'- uCGCGUUCA-UGCUgcGCCGGUAGuCG- -5'
17137 5' -55.4 NC_004333.2 + 36822 0.66 0.685268
Target:  5'- uGcCGuCGAGUGCG-CGCuacGGCCAUCgccGGCc -3'
miRNA:   3'- uC-GC-GUUCAUGCuGCG---CCGGUAG---UCG- -5'
17137 5' -55.4 NC_004333.2 + 36345 0.69 0.464881
Target:  5'- uGGCGCAGG-ACGuCGCGuGUCGcugcaugucguggcUCGGCg -3'
miRNA:   3'- -UCGCGUUCaUGCuGCGC-CGGU--------------AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 36189 0.71 0.389669
Target:  5'- cGCGCAGGccgucgccaaccuUGCGuACGUGGCUGgcgcgCAGCg -3'
miRNA:   3'- uCGCGUUC-------------AUGC-UGCGCCGGUa----GUCG- -5'
17137 5' -55.4 NC_004333.2 + 35378 0.67 0.607518
Target:  5'- gAGUGCAGuaACGGCgGCGGCCAcCAu- -3'
miRNA:   3'- -UCGCGUUcaUGCUG-CGCCGGUaGUcg -5'
17137 5' -55.4 NC_004333.2 + 34309 0.74 0.230682
Target:  5'- gGGCGuCAAGUGCGACcgGCGGCgacaAUguGCg -3'
miRNA:   3'- -UCGC-GUUCAUGCUG--CGCCGg---UAguCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.