miRNA display CGI


Results 41 - 60 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17137 5' -55.4 NC_004333.2 + 33673 0.66 0.640911
Target:  5'- gAGCGUAucUGCGACaugggacaGCGGCU-UCGGCu -3'
miRNA:   3'- -UCGCGUucAUGCUG--------CGCCGGuAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 33380 0.75 0.209564
Target:  5'- uGGCGCGccGGUuggcuCGAUGCGGCCGacgcaacgcgcgcgcUCGGCu -3'
miRNA:   3'- -UCGCGU--UCAu----GCUGCGCCGGU---------------AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 33348 0.74 0.256221
Target:  5'- uGCGCGAGaACGGCGCG-CCGUCGu- -3'
miRNA:   3'- uCGCGUUCaUGCUGCGCcGGUAGUcg -5'
17137 5' -55.4 NC_004333.2 + 32751 0.7 0.418613
Target:  5'- cGCGCAGGU-CGcugcCGcCGGCCAUaAGCg -3'
miRNA:   3'- uCGCGUUCAuGCu---GC-GCCGGUAgUCG- -5'
17137 5' -55.4 NC_004333.2 + 32608 0.66 0.629775
Target:  5'- cGaCGCGAGcGCGcCGCGcGaCGUCGGCa -3'
miRNA:   3'- uC-GCGUUCaUGCuGCGC-CgGUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 32283 0.72 0.313392
Target:  5'- uGGCGCGGGUcgGCGGCGauGUCgacgugcGUCAGCa -3'
miRNA:   3'- -UCGCGUUCA--UGCUGCgcCGG-------UAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 32134 0.69 0.467926
Target:  5'- aAGCGCcAGcACGucgaACGCGGCgacuGUCGGCa -3'
miRNA:   3'- -UCGCGuUCaUGC----UGCGCCGg---UAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 31702 0.67 0.596418
Target:  5'- cGGC-CGAcuGUucACGcGCGCGGCCA-CAGCg -3'
miRNA:   3'- -UCGcGUU--CA--UGC-UGCGCCGGUaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 31460 0.66 0.642025
Target:  5'- cGCGCAAGaaggaguucgaugagACGaaacGCGCGGCUGcgucgcUCGGCa -3'
miRNA:   3'- uCGCGUUCa--------------UGC----UGCGCCGGU------AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 31363 0.8 0.103269
Target:  5'- cGGCGCAGGUGCGGC-CGGUCucgcCGGCa -3'
miRNA:   3'- -UCGCGUUCAUGCUGcGCCGGua--GUCG- -5'
17137 5' -55.4 NC_004333.2 + 31307 0.74 0.243173
Target:  5'- cGGCGC---UGCGccGCGCGGCCGUCGcGCc -3'
miRNA:   3'- -UCGCGuucAUGC--UGCGCCGGUAGU-CG- -5'
17137 5' -55.4 NC_004333.2 + 31257 0.78 0.141074
Target:  5'- cGGCGUugucGAGUACGGCGCG-CCGUCugGGCg -3'
miRNA:   3'- -UCGCG----UUCAUGCUGCGCcGGUAG--UCG- -5'
17137 5' -55.4 NC_004333.2 + 31115 0.69 0.467926
Target:  5'- cGGCGCGAGUugcugcucGCG-CGCGaGCC--CGGCg -3'
miRNA:   3'- -UCGCGUUCA--------UGCuGCGC-CGGuaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 31082 0.75 0.201812
Target:  5'- gAGCGCcugcAGGUuCGGCGCcuGGcCCGUCAGCg -3'
miRNA:   3'- -UCGCG----UUCAuGCUGCG--CC-GGUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 30950 0.66 0.65204
Target:  5'- cGGCGa---UACGcCgGCGGCCGUCAaGCg -3'
miRNA:   3'- -UCGCguucAUGCuG-CGCCGGUAGU-CG- -5'
17137 5' -55.4 NC_004333.2 + 30499 0.69 0.502055
Target:  5'- uGGCGCGAGgcagucgcUACGGCGCGcgaauucgguccggcGCCGgucgcuucgacguUCGGCa -3'
miRNA:   3'- -UCGCGUUC--------AUGCUGCGC---------------CGGU-------------AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 30371 0.69 0.457819
Target:  5'- uGuCGCAGGcGCGACgGCGGCCAgcUC-GCc -3'
miRNA:   3'- uC-GCGUUCaUGCUG-CGCCGGU--AGuCG- -5'
17137 5' -55.4 NC_004333.2 + 30294 0.66 0.629775
Target:  5'- cGCGCGGcGcGCGAUcgaucaggcaGCGGCUAUCAcgGCa -3'
miRNA:   3'- uCGCGUU-CaUGCUG----------CGCCGGUAGU--CG- -5'
17137 5' -55.4 NC_004333.2 + 30247 0.67 0.574319
Target:  5'- uGCGCGAGUcCGACuuGguGCCcUCGGCg -3'
miRNA:   3'- uCGCGUUCAuGCUGcgC--CGGuAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 30172 0.76 0.17136
Target:  5'- uGCGCGGGUcgcgcauCGACGCGuuCCGUCGGCg -3'
miRNA:   3'- uCGCGUUCAu------GCUGCGCc-GGUAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.