miRNA display CGI


Results 61 - 80 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17137 5' -55.4 NC_004333.2 + 30045 0.78 0.141074
Target:  5'- cGGCGCcGGUgGCaGCGCGGCCGcgcUCGGCa -3'
miRNA:   3'- -UCGCGuUCA-UGcUGCGCCGGU---AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 29997 0.73 0.276862
Target:  5'- gAGCGCGAGcaccaUGCGGCGCcGCuCGUCGGg -3'
miRNA:   3'- -UCGCGUUC-----AUGCUGCGcCG-GUAGUCg -5'
17137 5' -55.4 NC_004333.2 + 29959 0.66 0.663149
Target:  5'- aAGCGCGugccgAGcGCGGcCGCGcuGCCAcCGGCg -3'
miRNA:   3'- -UCGCGU-----UCaUGCU-GCGC--CGGUaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 29913 0.74 0.248975
Target:  5'- cGCuGCGaacgaucAGUcgacugGCGGCGCGGCgAUCAGCa -3'
miRNA:   3'- uCG-CGU-------UCA------UGCUGCGCCGgUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 29897 0.66 0.674229
Target:  5'- uGCGCGaucGGgcCGcGCGCGGCauccUCGGCc -3'
miRNA:   3'- uCGCGU---UCauGC-UGCGCCGgu--AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 29862 0.68 0.552414
Target:  5'- cAGCG-AAGcGCG-CGCGGUaguCGUCGGCg -3'
miRNA:   3'- -UCGCgUUCaUGCuGCGCCG---GUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 29805 0.67 0.596418
Target:  5'- cGGCGUGcAGaACuACGCGaGCgGUCAGCg -3'
miRNA:   3'- -UCGCGU-UCaUGcUGCGC-CGgUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 29786 0.73 0.269838
Target:  5'- uGGCGCGGGUcguucGCGACGaCGGUCAcCGGg -3'
miRNA:   3'- -UCGCGUUCA-----UGCUGC-GCCGGUaGUCg -5'
17137 5' -55.4 NC_004333.2 + 29258 0.66 0.629775
Target:  5'- uGCGCGGGUuCGugcaGCGGCCcgacCAGUc -3'
miRNA:   3'- uCGCGUUCAuGCug--CGCCGGua--GUCG- -5'
17137 5' -55.4 NC_004333.2 + 29119 0.69 0.478145
Target:  5'- cGGCGCGAucGUggGCGGCGCGGUgcUCGcGCu -3'
miRNA:   3'- -UCGCGUU--CA--UGCUGCGCCGguAGU-CG- -5'
17137 5' -55.4 NC_004333.2 + 29009 0.66 0.685268
Target:  5'- uGCGCAuc-GCG-CGCGGCUAgcacgauaacCAGCg -3'
miRNA:   3'- uCGCGUucaUGCuGCGCCGGUa---------GUCG- -5'
17137 5' -55.4 NC_004333.2 + 28977 0.66 0.65204
Target:  5'- cGGCGaucAGUu--GCGCGGCCgccggGUCGGCg -3'
miRNA:   3'- -UCGCgu-UCAugcUGCGCCGG-----UAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 28903 0.74 0.243173
Target:  5'- cGGCGCAGGc-CGGCGCauacuuGCCGUCGGUg -3'
miRNA:   3'- -UCGCGUUCauGCUGCGc-----CGGUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 28827 0.69 0.498906
Target:  5'- cGCGC-GGU-CGACGCGGCgcUCGcGCa -3'
miRNA:   3'- uCGCGuUCAuGCUGCGCCGguAGU-CG- -5'
17137 5' -55.4 NC_004333.2 + 28775 0.71 0.355169
Target:  5'- cGCGCGGGUcgcgGCGGCGCGacuucCCAUC-GCg -3'
miRNA:   3'- uCGCGUUCA----UGCUGCGCc----GGUAGuCG- -5'
17137 5' -55.4 NC_004333.2 + 28529 0.66 0.670909
Target:  5'- uGGCGCGcGUAacugGCGGCCcgacaaguacaugaAUCAGCg -3'
miRNA:   3'- -UCGCGUuCAUgcugCGCCGG--------------UAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 28411 0.69 0.467926
Target:  5'- cGGCGCGauGGUACGAUGC-GCauguUCGGUg -3'
miRNA:   3'- -UCGCGU--UCAUGCUGCGcCGgu--AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 28201 0.66 0.674229
Target:  5'- cGGCGCGcAGUACGgaaACGCGcGCguugagauuuUCGGCg -3'
miRNA:   3'- -UCGCGU-UCAUGC---UGCGC-CGgu--------AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 27878 0.85 0.046991
Target:  5'- uGCGUucGAGUACGGCGgcaucacuuCGGCCAUCAGCg -3'
miRNA:   3'- uCGCG--UUCAUGCUGC---------GCCGGUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 27729 0.66 0.674229
Target:  5'- uGCGCGAucGCGGCGCGaaucUgGUCGGCc -3'
miRNA:   3'- uCGCGUUcaUGCUGCGCc---GgUAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.