Results 81 - 100 of 175 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17137 | 5' | -55.4 | NC_004333.2 | + | 27478 | 0.73 | 0.284756 |
Target: 5'- cGCGCAGGguuacggcaaacaugACGGCaCGGCCGUCGcGCc -3' miRNA: 3'- uCGCGUUCa--------------UGCUGcGCCGGUAGU-CG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 27299 | 0.66 | 0.685268 |
Target: 5'- cGGCGaaaccgAUGAUGCGGCCA--GGCu -3' miRNA: 3'- -UCGCguuca-UGCUGCGCCGGUagUCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 26911 | 0.77 | 0.157289 |
Target: 5'- gAGCGCGAcgcgacagcacucGcUACGACGCugcaggccgGGCCGUCGGCa -3' miRNA: 3'- -UCGCGUU-------------C-AUGCUGCG---------CCGGUAGUCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 25972 | 0.74 | 0.243173 |
Target: 5'- aAGCGCAGGgcgGCGaaGCGCGGCgcUUGGCg -3' miRNA: 3'- -UCGCGUUCa--UGC--UGCGCCGguAGUCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 25938 | 0.71 | 0.390582 |
Target: 5'- uGCGCGcGGcGCGAUgccgGCGGCCAguacgCGGCg -3' miRNA: 3'- uCGCGU-UCaUGCUG----CGCCGGUa----GUCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 25522 | 0.71 | 0.372589 |
Target: 5'- gAGCGCGucuuGGUACG-CGCcGCUcgagGUCAGCg -3' miRNA: 3'- -UCGCGU----UCAUGCuGCGcCGG----UAGUCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 25409 | 0.72 | 0.306418 |
Target: 5'- gAGCGCGccugcagcGUGcCGGCgGCGGCCGUCAcGCc -3' miRNA: 3'- -UCGCGUu-------CAU-GCUG-CGCCGGUAGU-CG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 25256 | 0.68 | 0.520059 |
Target: 5'- cGCGCAgcgAGUucgaGACGCGGCgGcaGGCg -3' miRNA: 3'- uCGCGU---UCAug--CUGCGCCGgUagUCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 24190 | 0.69 | 0.478145 |
Target: 5'- cAGCGCGAaUGCGACGguacCGGCCGcCuGGCc -3' miRNA: 3'- -UCGCGUUcAUGCUGC----GCCGGUaG-UCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 23905 | 0.73 | 0.276862 |
Target: 5'- uGCGgAAGccgaACGGCGCGuaCGUCAGCg -3' miRNA: 3'- uCGCgUUCa---UGCUGCGCcgGUAGUCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 23487 | 0.66 | 0.674229 |
Target: 5'- cGGCgGCGGGUACG-UGCcgGGCUAcCAGUa -3' miRNA: 3'- -UCG-CGUUCAUGCuGCG--CCGGUaGUCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 23048 | 0.7 | 0.428224 |
Target: 5'- cGGCGaCcGGUaccGCGACGCuGCCggCGGCg -3' miRNA: 3'- -UCGC-GuUCA---UGCUGCGcCGGuaGUCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 22945 | 0.67 | 0.607518 |
Target: 5'- gAGCGCcAGUACGAuCGC-GCCgAUC-GCc -3' miRNA: 3'- -UCGCGuUCAUGCU-GCGcCGG-UAGuCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 22873 | 0.66 | 0.674229 |
Target: 5'- cAGCGCGacgaacaccuGGUACGcaacgUGCGGCgCAUCGaacGCa -3' miRNA: 3'- -UCGCGU----------UCAUGCu----GCGCCG-GUAGU---CG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 22771 | 0.66 | 0.674229 |
Target: 5'- aGGCGCAucuGUcAUGA-GUGGCaCGUCGGUu -3' miRNA: 3'- -UCGCGUu--CA-UGCUgCGCCG-GUAGUCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 22431 | 0.75 | 0.224642 |
Target: 5'- cGGCGC--GUGCGGCGCaGGUuuCGUCGGCu -3' miRNA: 3'- -UCGCGuuCAUGCUGCG-CCG--GUAGUCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 21968 | 0.76 | 0.191171 |
Target: 5'- uAGCGCAAGaACGGCGCccaauuggGGCUAUgcgCAGCg -3' miRNA: 3'- -UCGCGUUCaUGCUGCG--------CCGGUA---GUCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 21776 | 0.67 | 0.596418 |
Target: 5'- uGGCGCAcGUGCGcauagaGCGCgucgagcugcucGGCCGUCAu- -3' miRNA: 3'- -UCGCGUuCAUGC------UGCG------------CCGGUAGUcg -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 21706 | 0.67 | 0.61864 |
Target: 5'- cGCGCucuaUGCGcACGUGcGCCAgCAGCu -3' miRNA: 3'- uCGCGuuc-AUGC-UGCGC-CGGUaGUCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 21210 | 0.68 | 0.509436 |
Target: 5'- uGCGCAucaAUGG-GCGGCCGUCGcGCg -3' miRNA: 3'- uCGCGUucaUGCUgCGCCGGUAGU-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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