miRNA display CGI


Results 101 - 120 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17137 5' -55.4 NC_004333.2 + 21075 0.67 0.606407
Target:  5'- gGGCGCcaacuaUGCGACGUGcggcuucacgaacGCCGUCGGUc -3'
miRNA:   3'- -UCGCGuuc---AUGCUGCGC-------------CGGUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 20984 0.68 0.513675
Target:  5'- cGgGCGAGUgggugcguuucgagcGCGugGCaGCCGUCAcggGCg -3'
miRNA:   3'- uCgCGUUCA---------------UGCugCGcCGGUAGU---CG- -5'
17137 5' -55.4 NC_004333.2 + 20844 0.69 0.478145
Target:  5'- gAGCGCAGGcguguCGACGUucaGGCgcgcagccgCGUCGGCg -3'
miRNA:   3'- -UCGCGUUCau---GCUGCG---CCG---------GUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 20638 0.7 0.418613
Target:  5'- cGGCGCGAcc-CGACGCG-CCGacgaUCAGCg -3'
miRNA:   3'- -UCGCGUUcauGCUGCGCcGGU----AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 20586 0.73 0.284031
Target:  5'- cAGCGagcGGcGCGGCgGCGGCCggCAGCg -3'
miRNA:   3'- -UCGCgu-UCaUGCUG-CGCCGGuaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 20478 0.74 0.236858
Target:  5'- aGGCGguGacGaGCGGCGCGGCCAcugCGGCc -3'
miRNA:   3'- -UCGCguU--CaUGCUGCGCCGGUa--GUCG- -5'
17137 5' -55.4 NC_004333.2 + 20460 0.66 0.65204
Target:  5'- uGCGCcGGUcGUGACGCaGCCgGUUAGCg -3'
miRNA:   3'- uCGCGuUCA-UGCUGCGcCGG-UAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 20181 0.67 0.582035
Target:  5'- gGGCGCAcacaagaaggcggcAGUAaugGGCGCGGCUcgC-GCu -3'
miRNA:   3'- -UCGCGU--------------UCAUg--CUGCGCCGGuaGuCG- -5'
17137 5' -55.4 NC_004333.2 + 19956 0.68 0.529692
Target:  5'- cGcCGCGAGUGCuuugcccGACuGCGcGCUGUCGGCc -3'
miRNA:   3'- uC-GCGUUCAUG-------CUG-CGC-CGGUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 19863 0.76 0.170889
Target:  5'- uGGCGCGAGUGCGaccgauuacgcccGCGCucagcagcucugGGCCAUCcGCg -3'
miRNA:   3'- -UCGCGUUCAUGC-------------UGCG------------CCGGUAGuCG- -5'
17137 5' -55.4 NC_004333.2 + 19733 0.7 0.399789
Target:  5'- cGUGCAAG-ACGGCGCcgcuGCCGUCAacgacGCg -3'
miRNA:   3'- uCGCGUUCaUGCUGCGc---CGGUAGU-----CG- -5'
17137 5' -55.4 NC_004333.2 + 19634 0.73 0.284031
Target:  5'- gAGCGCGGc--CGACGCuGGCCGUCAacaGCu -3'
miRNA:   3'- -UCGCGUUcauGCUGCG-CCGGUAGU---CG- -5'
17137 5' -55.4 NC_004333.2 + 19624 0.73 0.298809
Target:  5'- cGCGCcgaccGUGCGACcgGCGcCCAUCAGCu -3'
miRNA:   3'- uCGCGuu---CAUGCUG--CGCcGGUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 19593 0.66 0.65204
Target:  5'- cGCGCGAucaACGACGCgaacaaGGUCA-CGGCg -3'
miRNA:   3'- uCGCGUUca-UGCUGCG------CCGGUaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 19553 0.66 0.685268
Target:  5'- gGGCGCcGGUcgcacgguCGGCGCGGCaCAagGGg -3'
miRNA:   3'- -UCGCGuUCAu-------GCUGCGCCG-GUagUCg -5'
17137 5' -55.4 NC_004333.2 + 19502 0.7 0.418613
Target:  5'- uGGCGCGcugGCGGCGCucguGGCCGUaugGGCa -3'
miRNA:   3'- -UCGCGUucaUGCUGCG----CCGGUAg--UCG- -5'
17137 5' -55.4 NC_004333.2 + 19478 0.7 0.418613
Target:  5'- uAGCGCGGcGUA-GGCGUaGCgCAUCAGCa -3'
miRNA:   3'- -UCGCGUU-CAUgCUGCGcCG-GUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 18893 0.68 0.561148
Target:  5'- cGCGCGGGcuuCGAuagcagcacgcgcccUGCGGCCGcgcgauaagcgcgguUCAGCg -3'
miRNA:   3'- uCGCGUUCau-GCU---------------GCGCCGGU---------------AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 18327 0.72 0.314174
Target:  5'- uGUGCAGGguucUGCGGauuagcaGCGuGCCGUCGGCg -3'
miRNA:   3'- uCGCGUUC----AUGCUg------CGC-CGGUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 18095 0.66 0.65204
Target:  5'- cAGCGCGuAGaacuCGGC-CGGCUucGUCGGCu -3'
miRNA:   3'- -UCGCGU-UCau--GCUGcGCCGG--UAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.