miRNA display CGI


Results 41 - 60 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17137 5' -55.4 NC_004333.2 + 24190 0.69 0.478145
Target:  5'- cAGCGCGAaUGCGACGguacCGGCCGcCuGGCc -3'
miRNA:   3'- -UCGCGUUcAUGCUGC----GCCGGUaG-UCG- -5'
17137 5' -55.4 NC_004333.2 + 32283 0.72 0.313392
Target:  5'- uGGCGCGGGUcgGCGGCGauGUCgacgugcGUCAGCa -3'
miRNA:   3'- -UCGCGUUCA--UGCUGCgcCGG-------UAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 10200 0.81 0.086885
Target:  5'- cGCGCAc--GCGcAUGCGGCCGUCGGCa -3'
miRNA:   3'- uCGCGUucaUGC-UGCGCCGGUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 5640 0.69 0.47098
Target:  5'- cGCGCAccaugccguuaccGGUuuucuucuucgacuCGACuGCGGCCAUguGCa -3'
miRNA:   3'- uCGCGU-------------UCAu-------------GCUG-CGCCGGUAguCG- -5'
17137 5' -55.4 NC_004333.2 + 27878 0.85 0.046991
Target:  5'- uGCGUucGAGUACGGCGgcaucacuuCGGCCAUCAGCg -3'
miRNA:   3'- uCGCG--UUCAUGCUGC---------GCCGGUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 21075 0.67 0.606407
Target:  5'- gGGCGCcaacuaUGCGACGUGcggcuucacgaacGCCGUCGGUc -3'
miRNA:   3'- -UCGCGuuc---AUGCUGCGC-------------CGGUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 19863 0.76 0.170889
Target:  5'- uGGCGCGAGUGCGaccgauuacgcccGCGCucagcagcucugGGCCAUCcGCg -3'
miRNA:   3'- -UCGCGUUCAUGC-------------UGCG------------CCGGUAGuCG- -5'
17137 5' -55.4 NC_004333.2 + 8988 0.67 0.585348
Target:  5'- uGCGCGGcGgcgacCGACGCGGCguUCgcGGCu -3'
miRNA:   3'- uCGCGUU-Cau---GCUGCGCCGguAG--UCG- -5'
17137 5' -55.4 NC_004333.2 + 20181 0.67 0.582035
Target:  5'- gGGCGCAcacaagaaggcggcAGUAaugGGCGCGGCUcgC-GCu -3'
miRNA:   3'- -UCGCGU--------------UCAUg--CUGCGCCGGuaGuCG- -5'
17137 5' -55.4 NC_004333.2 + 13754 0.68 0.552414
Target:  5'- cGCGUAGG-ACGcCGCGcGCCGcucgcgCGGCg -3'
miRNA:   3'- uCGCGUUCaUGCuGCGC-CGGUa-----GUCG- -5'
17137 5' -55.4 NC_004333.2 + 11334 0.68 0.541554
Target:  5'- cGCGCGAugaagGCGGCGCGGuUCGUCGu- -3'
miRNA:   3'- uCGCGUUca---UGCUGCGCC-GGUAGUcg -5'
17137 5' -55.4 NC_004333.2 + 46945 0.68 0.520059
Target:  5'- cGCGCAGccaagGCGGCGCGcGCCGacgacaAGCa -3'
miRNA:   3'- uCGCGUUca---UGCUGCGC-CGGUag----UCG- -5'
17137 5' -55.4 NC_004333.2 + 21210 0.68 0.509436
Target:  5'- uGCGCAucaAUGG-GCGGCCGUCGcGCg -3'
miRNA:   3'- uCGCGUucaUGCUgCGCCGGUAGU-CG- -5'
17137 5' -55.4 NC_004333.2 + 11920 0.7 0.437964
Target:  5'- uGCGCAGcgGCG-CGCGcGCCAUUAcGCg -3'
miRNA:   3'- uCGCGUUcaUGCuGCGC-CGGUAGU-CG- -5'
17137 5' -55.4 NC_004333.2 + 41437 0.7 0.409133
Target:  5'- aGGCGCugcu-CGACGCGGgCgaGUCGGCc -3'
miRNA:   3'- -UCGCGuucauGCUGCGCCgG--UAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 11888 0.71 0.372589
Target:  5'- gGGCGCGAGcaccuuguCGuCGCGGCC--CGGCa -3'
miRNA:   3'- -UCGCGUUCau------GCuGCGCCGGuaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 38301 0.72 0.322079
Target:  5'- cGCGCGAccGUGC-ACGCGGCgAcCGGCg -3'
miRNA:   3'- uCGCGUU--CAUGcUGCGCCGgUaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 10747 0.73 0.284031
Target:  5'- cGGCGUAucGUACcGCGCGGCC--CGGCg -3'
miRNA:   3'- -UCGCGUu-CAUGcUGCGCCGGuaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 29786 0.73 0.269838
Target:  5'- uGGCGCGGGUcguucGCGACGaCGGUCAcCGGg -3'
miRNA:   3'- -UCGCGUUCA-----UGCUGC-GCCGGUaGUCg -5'
17137 5' -55.4 NC_004333.2 + 31082 0.75 0.201812
Target:  5'- gAGCGCcugcAGGUuCGGCGCcuGGcCCGUCAGCg -3'
miRNA:   3'- -UCGCG----UUCAuGCUGCG--CC-GGUAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.