miRNA display CGI


Results 61 - 80 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17137 5' -55.4 NC_004333.2 + 21210 0.68 0.509436
Target:  5'- uGCGCAucaAUGG-GCGGCCGUCGcGCg -3'
miRNA:   3'- uCGCGUucaUGCUgCGCCGGUAGU-CG- -5'
17137 5' -55.4 NC_004333.2 + 8915 0.68 0.530767
Target:  5'- uGGCGuCGAuGcGCGACGCGGCUucGUUcGCg -3'
miRNA:   3'- -UCGC-GUU-CaUGCUGCGCCGG--UAGuCG- -5'
17137 5' -55.4 NC_004333.2 + 15280 0.76 0.17136
Target:  5'- cGUGCugcgGCGGCGCGGUCAgcaUCAGCa -3'
miRNA:   3'- uCGCGuucaUGCUGCGCCGGU---AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 28903 0.74 0.243173
Target:  5'- cGGCGCAGGc-CGGCGCauacuuGCCGUCGGUg -3'
miRNA:   3'- -UCGCGUUCauGCUGCGc-----CGGUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 23905 0.73 0.276862
Target:  5'- uGCGgAAGccgaACGGCGCGuaCGUCAGCg -3'
miRNA:   3'- uCGCgUUCa---UGCUGCGCcgGUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 19634 0.73 0.284031
Target:  5'- gAGCGCGGc--CGACGCuGGCCGUCAacaGCu -3'
miRNA:   3'- -UCGCGUUcauGCUGCG-CCGGUAGU---CG- -5'
17137 5' -55.4 NC_004333.2 + 2431 0.71 0.355169
Target:  5'- cAGCGUgccuuGGUACGGCGCGGCgAaCAccuGCg -3'
miRNA:   3'- -UCGCGu----UCAUGCUGCGCCGgUaGU---CG- -5'
17137 5' -55.4 NC_004333.2 + 25522 0.71 0.372589
Target:  5'- gAGCGCGucuuGGUACG-CGCcGCUcgagGUCAGCg -3'
miRNA:   3'- -UCGCGU----UCAUGCuGCGcCGG----UAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 19502 0.7 0.418613
Target:  5'- uGGCGCGcugGCGGCGCucguGGCCGUaugGGCa -3'
miRNA:   3'- -UCGCGUucaUGCUGCG----CCGGUAg--UCG- -5'
17137 5' -55.4 NC_004333.2 + 31115 0.69 0.467926
Target:  5'- cGGCGCGAGUugcugcucGCG-CGCGaGCC--CGGCg -3'
miRNA:   3'- -UCGCGUUCA--------UGCuGCGC-CGGuaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 29897 0.66 0.674229
Target:  5'- uGCGCGaucGGgcCGcGCGCGGCauccUCGGCc -3'
miRNA:   3'- uCGCGU---UCauGC-UGCGCCGgu--AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 27729 0.66 0.674229
Target:  5'- uGCGCGAucGCGGCGCGaaucUgGUCGGCc -3'
miRNA:   3'- uCGCGUUcaUGCUGCGCc---GgUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 15524 0.68 0.541554
Target:  5'- cGCGuCAAGcGCGAUguuaGCGGgCAUCgAGCa -3'
miRNA:   3'- uCGC-GUUCaUGCUG----CGCCgGUAG-UCG- -5'
17137 5' -55.4 NC_004333.2 + 2358 0.68 0.563338
Target:  5'- uGCGCAgcuggaAGUugauCGACGCGGCg--UAGCc -3'
miRNA:   3'- uCGCGU------UCAu---GCUGCGCCGguaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 8988 0.67 0.585348
Target:  5'- uGCGCGGcGgcgacCGACGCGGCguUCgcGGCu -3'
miRNA:   3'- uCGCGUU-Cau---GCUGCGCCGguAG--UCG- -5'
17137 5' -55.4 NC_004333.2 + 21075 0.67 0.606407
Target:  5'- gGGCGCcaacuaUGCGACGUGcggcuucacgaacGCCGUCGGUc -3'
miRNA:   3'- -UCGCGuuc---AUGCUGCGC-------------CGGUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 44960 0.67 0.607518
Target:  5'- uGCGCGcGcACGuCgGCGGCCGacugCAGCa -3'
miRNA:   3'- uCGCGUuCaUGCuG-CGCCGGUa---GUCG- -5'
17137 5' -55.4 NC_004333.2 + 47693 0.67 0.61864
Target:  5'- aGGCG-AAGUACGACGaaGCguUCAcGCu -3'
miRNA:   3'- -UCGCgUUCAUGCUGCgcCGguAGU-CG- -5'
17137 5' -55.4 NC_004333.2 + 28977 0.66 0.65204
Target:  5'- cGGCGaucAGUu--GCGCGGCCgccggGUCGGCg -3'
miRNA:   3'- -UCGCgu-UCAugcUGCGCCGG-----UAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 6705 0.66 0.663149
Target:  5'- gGGCGCAuugGCGACGa-GCCAUgCGuGCa -3'
miRNA:   3'- -UCGCGUucaUGCUGCgcCGGUA-GU-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.