miRNA display CGI


Results 81 - 100 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17137 5' -55.4 NC_004333.2 + 11974 0.72 0.314174
Target:  5'- cGCGCGucgACGAuCGCGGCCGUaucGCg -3'
miRNA:   3'- uCGCGUucaUGCU-GCGCCGGUAgu-CG- -5'
17137 5' -55.4 NC_004333.2 + 19634 0.73 0.284031
Target:  5'- gAGCGCGGc--CGACGCuGGCCGUCAacaGCu -3'
miRNA:   3'- -UCGCGUUcauGCUGCG-CCGGUAGU---CG- -5'
17137 5' -55.4 NC_004333.2 + 16829 0.67 0.615302
Target:  5'- aAGCGUucGUaucgcucgagcagcGCGuCGCGGCCAa-GGCg -3'
miRNA:   3'- -UCGCGuuCA--------------UGCuGCGCCGGUagUCG- -5'
17137 5' -55.4 NC_004333.2 + 21706 0.67 0.61864
Target:  5'- cGCGCucuaUGCGcACGUGcGCCAgCAGCu -3'
miRNA:   3'- uCGCGuuc-AUGC-UGCGC-CGGUaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 36345 0.69 0.464881
Target:  5'- uGGCGCAGG-ACGuCGCGuGUCGcugcaugucguggcUCGGCg -3'
miRNA:   3'- -UCGCGUUCaUGCuGCGC-CGGU--------------AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 28411 0.69 0.467926
Target:  5'- cGGCGCGauGGUACGAUGC-GCauguUCGGUg -3'
miRNA:   3'- -UCGCGU--UCAUGCUGCGcCGgu--AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 20844 0.69 0.478145
Target:  5'- gAGCGCAGGcguguCGACGUucaGGCgcgcagccgCGUCGGCg -3'
miRNA:   3'- -UCGCGUUCau---GCUGCG---CCG---------GUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 17090 0.67 0.596418
Target:  5'- cAGCGUgcacGAGU-CGAgCGCGGCgA-CGGCg -3'
miRNA:   3'- -UCGCG----UUCAuGCU-GCGCCGgUaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 30371 0.69 0.457819
Target:  5'- uGuCGCAGGcGCGACgGCGGCCAgcUC-GCc -3'
miRNA:   3'- uC-GCGUUCaUGCUG-CGCCGGU--AGuCG- -5'
17137 5' -55.4 NC_004333.2 + 6669 0.7 0.437964
Target:  5'- cGGCGCuGG-GCGGCGCG-CCGUggCGGCg -3'
miRNA:   3'- -UCGCGuUCaUGCUGCGCcGGUA--GUCG- -5'
17137 5' -55.4 NC_004333.2 + 36824 0.67 0.607518
Target:  5'- cGUGCGAGUgACGGauCGGCUAUCuGUc -3'
miRNA:   3'- uCGCGUUCA-UGCUgcGCCGGUAGuCG- -5'
17137 5' -55.4 NC_004333.2 + 35378 0.67 0.607518
Target:  5'- gAGUGCAGuaACGGCgGCGGCCAcCAu- -3'
miRNA:   3'- -UCGCGUUcaUGCUG-CGCCGGUaGUcg -5'
17137 5' -55.4 NC_004333.2 + 13829 0.67 0.607518
Target:  5'- cGCGCGAGcgGCG-CGCGG-CGUCcuacGCg -3'
miRNA:   3'- uCGCGUUCa-UGCuGCGCCgGUAGu---CG- -5'
17137 5' -55.4 NC_004333.2 + 45990 0.7 0.418613
Target:  5'- cGCGCA------ACGCGGCCAgcUCGGCa -3'
miRNA:   3'- uCGCGUucaugcUGCGCCGGU--AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 20638 0.7 0.418613
Target:  5'- cGGCGCGAcc-CGACGCG-CCGacgaUCAGCg -3'
miRNA:   3'- -UCGCGUUcauGCUGCGCcGGU----AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 23048 0.7 0.428224
Target:  5'- cGGCGaCcGGUaccGCGACGCuGCCggCGGCg -3'
miRNA:   3'- -UCGC-GuUCA---UGCUGCGcCGGuaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 4954 0.7 0.428224
Target:  5'- cAGCGCGcgcuacauGGUcagcgGCGGCaGCGGC-AUCGGCa -3'
miRNA:   3'- -UCGCGU--------UCA-----UGCUG-CGCCGgUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 11844 0.7 0.437964
Target:  5'- gAGCGCAAGUAUGGuCGCgcacucaaGGUgaaCGUCGGUg -3'
miRNA:   3'- -UCGCGUUCAUGCU-GCG--------CCG---GUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 33673 0.66 0.640911
Target:  5'- gAGCGUAucUGCGACaugggacaGCGGCU-UCGGCu -3'
miRNA:   3'- -UCGCGUucAUGCUG--------CGCCGGuAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 31460 0.66 0.642025
Target:  5'- cGCGCAAGaaggaguucgaugagACGaaacGCGCGGCUGcgucgcUCGGCa -3'
miRNA:   3'- uCGCGUUCa--------------UGC----UGCGCCGGU------AGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.