miRNA display CGI


Results 101 - 120 of 175 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17137 5' -55.4 NC_004333.2 + 20844 0.69 0.478145
Target:  5'- gAGCGCAGGcguguCGACGUucaGGCgcgcagccgCGUCGGCg -3'
miRNA:   3'- -UCGCGUUCau---GCUGCG---CCG---------GUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 45990 0.7 0.418613
Target:  5'- cGCGCA------ACGCGGCCAgcUCGGCa -3'
miRNA:   3'- uCGCGUucaugcUGCGCCGGU--AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 20638 0.7 0.418613
Target:  5'- cGGCGCGAcc-CGACGCG-CCGacgaUCAGCg -3'
miRNA:   3'- -UCGCGUUcauGCUGCGCcGGU----AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 28411 0.69 0.467926
Target:  5'- cGGCGCGauGGUACGAUGC-GCauguUCGGUg -3'
miRNA:   3'- -UCGCGU--UCAUGCUGCGcCGgu--AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 4954 0.7 0.428224
Target:  5'- cAGCGCGcgcuacauGGUcagcgGCGGCaGCGGC-AUCGGCa -3'
miRNA:   3'- -UCGCGU--------UCA-----UGCUG-CGCCGgUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 11844 0.7 0.437964
Target:  5'- gAGCGCAAGUAUGGuCGCgcacucaaGGUgaaCGUCGGUg -3'
miRNA:   3'- -UCGCGUUCAUGCU-GCG--------CCG---GUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 6669 0.7 0.437964
Target:  5'- cGGCGCuGG-GCGGCGCG-CCGUggCGGCg -3'
miRNA:   3'- -UCGCGuUCaUGCUGCGCcGGUA--GUCG- -5'
17137 5' -55.4 NC_004333.2 + 44600 0.69 0.498906
Target:  5'- cGCGCgAAGUGCu-CGgGGUgAUCGGCc -3'
miRNA:   3'- uCGCG-UUCAUGcuGCgCCGgUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 28827 0.69 0.498906
Target:  5'- cGCGC-GGU-CGACGCGGCgcUCGcGCa -3'
miRNA:   3'- uCGCGuUCAuGCUGCGCCGguAGU-CG- -5'
17137 5' -55.4 NC_004333.2 + 22945 0.67 0.607518
Target:  5'- gAGCGCcAGUACGAuCGC-GCCgAUC-GCc -3'
miRNA:   3'- -UCGCGuUCAUGCU-GCGcCGG-UAGuCG- -5'
17137 5' -55.4 NC_004333.2 + 13532 0.67 0.607518
Target:  5'- uGCGCAuucGCGACGCGGugcgcacgaCCGUCAu- -3'
miRNA:   3'- uCGCGUucaUGCUGCGCC---------GGUAGUcg -5'
17137 5' -55.4 NC_004333.2 + 13829 0.67 0.607518
Target:  5'- cGCGCGAGcgGCG-CGCGG-CGUCcuacGCg -3'
miRNA:   3'- uCGCGUUCa-UGCuGCGCCgGUAGu---CG- -5'
17137 5' -55.4 NC_004333.2 + 35378 0.67 0.607518
Target:  5'- gAGUGCAGuaACGGCgGCGGCCAcCAu- -3'
miRNA:   3'- -UCGCGUUcaUGCUG-CGCCGGUaGUcg -5'
17137 5' -55.4 NC_004333.2 + 31257 0.78 0.141074
Target:  5'- cGGCGUugucGAGUACGGCGCG-CCGUCugGGCg -3'
miRNA:   3'- -UCGCG----UUCAUGCUGCGCcGGUAG--UCG- -5'
17137 5' -55.4 NC_004333.2 + 36824 0.67 0.607518
Target:  5'- cGUGCGAGUgACGGauCGGCUAUCuGUc -3'
miRNA:   3'- uCGCGUUCA-UGCUgcGCCGGUAGuCG- -5'
17137 5' -55.4 NC_004333.2 + 17090 0.67 0.596418
Target:  5'- cAGCGUgcacGAGU-CGAgCGCGGCgA-CGGCg -3'
miRNA:   3'- -UCGCG----UUCAuGCU-GCGCCGgUaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 10959 0.68 0.505213
Target:  5'- cGGCGCAAGUgacugucGCGccggcguucuucccGCGCGG-CGUCAaGCg -3'
miRNA:   3'- -UCGCGUUCA-------UGC--------------UGCGCCgGUAGU-CG- -5'
17137 5' -55.4 NC_004333.2 + 44938 0.68 0.509436
Target:  5'- cGgGCAGGUuguCGcGCGCGGCgAucuucuUCAGCg -3'
miRNA:   3'- uCgCGUUCAu--GC-UGCGCCGgU------AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 36345 0.69 0.464881
Target:  5'- uGGCGCAGG-ACGuCGCGuGUCGcugcaugucguggcUCGGCg -3'
miRNA:   3'- -UCGCGUUCaUGCuGCGC-CGGU--------------AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 30499 0.69 0.502055
Target:  5'- uGGCGCGAGgcagucgcUACGGCGCGcgaauucgguccggcGCCGgucgcuucgacguUCGGCa -3'
miRNA:   3'- -UCGCGUUC--------AUGCUGCGC---------------CGGU-------------AGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.