miRNA display CGI


Results 121 - 140 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17137 5' -55.4 NC_004333.2 + 4954 0.7 0.428224
Target:  5'- cAGCGCGcgcuacauGGUcagcgGCGGCaGCGGC-AUCGGCa -3'
miRNA:   3'- -UCGCGU--------UCA-----UGCUG-CGCCGgUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 23048 0.7 0.428224
Target:  5'- cGGCGaCcGGUaccGCGACGCuGCCggCGGCg -3'
miRNA:   3'- -UCGC-GuUCA---UGCUGCGcCGGuaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 20638 0.7 0.418613
Target:  5'- cGGCGCGAcc-CGACGCG-CCGacgaUCAGCg -3'
miRNA:   3'- -UCGCGUUcauGCUGCGCcGGU----AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 33380 0.75 0.209564
Target:  5'- uGGCGCGccGGUuggcuCGAUGCGGCCGacgcaacgcgcgcgcUCGGCu -3'
miRNA:   3'- -UCGCGU--UCAu----GCUGCGCCGGU---------------AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 21968 0.76 0.191171
Target:  5'- uAGCGCAAGaACGGCGCccaauuggGGCUAUgcgCAGCg -3'
miRNA:   3'- -UCGCGUUCaUGCUGCG--------CCGGUA---GUCG- -5'
17137 5' -55.4 NC_004333.2 + 30247 0.67 0.574319
Target:  5'- uGCGCGAGUcCGACuuGguGCCcUCGGCg -3'
miRNA:   3'- uCGCGUUCAuGCUGcgC--CGGuAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 18893 0.68 0.561148
Target:  5'- cGCGCGGGcuuCGAuagcagcacgcgcccUGCGGCCGcgcgauaagcgcgguUCAGCg -3'
miRNA:   3'- uCGCGUUCau-GCU---------------GCGCCGGU---------------AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 2109 0.68 0.558961
Target:  5'- cGCGCGGGcgucgacgugauCGAUGCGGCCgugacGUCGGg -3'
miRNA:   3'- uCGCGUUCau----------GCUGCGCCGG-----UAGUCg -5'
17137 5' -55.4 NC_004333.2 + 47846 0.68 0.541554
Target:  5'- -cUGCAGGUAuuCGAgCGCGGCgAUguGCu -3'
miRNA:   3'- ucGCGUUCAU--GCU-GCGCCGgUAguCG- -5'
17137 5' -55.4 NC_004333.2 + 25256 0.68 0.520059
Target:  5'- cGCGCAgcgAGUucgaGACGCGGCgGcaGGCg -3'
miRNA:   3'- uCGCGU---UCAug--CUGCGCCGgUagUCG- -5'
17137 5' -55.4 NC_004333.2 + 44938 0.68 0.509436
Target:  5'- cGgGCAGGUuguCGcGCGCGGCgAucuucuUCAGCg -3'
miRNA:   3'- uCgCGUUCAu--GC-UGCGCCGgU------AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 10959 0.68 0.505213
Target:  5'- cGGCGCAAGUgacugucGCGccggcguucuucccGCGCGG-CGUCAaGCg -3'
miRNA:   3'- -UCGCGUUCA-------UGC--------------UGCGCCgGUAGU-CG- -5'
17137 5' -55.4 NC_004333.2 + 28827 0.69 0.498906
Target:  5'- cGCGC-GGU-CGACGCGGCgcUCGcGCa -3'
miRNA:   3'- uCGCGuUCAuGCUGCGCCGguAGU-CG- -5'
17137 5' -55.4 NC_004333.2 + 44600 0.69 0.498906
Target:  5'- cGCGCgAAGUGCu-CGgGGUgAUCGGCc -3'
miRNA:   3'- uCGCG-UUCAUGcuGCgCCGgUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 31363 0.8 0.103269
Target:  5'- cGGCGCAGGUGCGGC-CGGUCucgcCGGCa -3'
miRNA:   3'- -UCGCGUUCAUGCUGcGCCGGua--GUCG- -5'
17137 5' -55.4 NC_004333.2 + 31257 0.78 0.141074
Target:  5'- cGGCGUugucGAGUACGGCGCG-CCGUCugGGCg -3'
miRNA:   3'- -UCGCG----UUCAUGCUGCGCcGGUAG--UCG- -5'
17137 5' -55.4 NC_004333.2 + 30045 0.78 0.141074
Target:  5'- cGGCGCcGGUgGCaGCGCGGCCGcgcUCGGCa -3'
miRNA:   3'- -UCGCGuUCA-UGcUGCGCCGGU---AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 26911 0.77 0.157289
Target:  5'- gAGCGCGAcgcgacagcacucGcUACGACGCugcaggccgGGCCGUCGGCa -3'
miRNA:   3'- -UCGCGUU-------------C-AUGCUGCG---------CCGGUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 43519 0.77 0.166702
Target:  5'- cGCGCAAGcGCGcgauGCGCGcGuCCGUCAGCc -3'
miRNA:   3'- uCGCGUUCaUGC----UGCGC-C-GGUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 30172 0.76 0.17136
Target:  5'- uGCGCGGGUcgcgcauCGACGCGuuCCGUCGGCg -3'
miRNA:   3'- uCGCGUUCAu------GCUGCGCc-GGUAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.