miRNA display CGI


Results 141 - 160 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17137 5' -55.4 NC_004333.2 + 30172 0.76 0.17136
Target:  5'- uGCGCGGGUcgcgcauCGACGCGuuCCGUCGGCg -3'
miRNA:   3'- uCGCGUUCAu------GCUGCGCc-GGUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 43519 0.77 0.166702
Target:  5'- cGCGCAAGcGCGcgauGCGCGcGuCCGUCAGCc -3'
miRNA:   3'- uCGCGUUCaUGC----UGCGC-C-GGUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 5128 0.72 0.346676
Target:  5'- cAGCGCcgcgcCGACGuCGGCCAaCAGCc -3'
miRNA:   3'- -UCGCGuucauGCUGC-GCCGGUaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 45128 0.71 0.355169
Target:  5'- gGGCGCG---GCcGCGCGGUguUCAGCg -3'
miRNA:   3'- -UCGCGUucaUGcUGCGCCGguAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 28827 0.69 0.498906
Target:  5'- cGCGC-GGU-CGACGCGGCgcUCGcGCa -3'
miRNA:   3'- uCGCGuUCAuGCUGCGCCGguAGU-CG- -5'
17137 5' -55.4 NC_004333.2 + 44600 0.69 0.498906
Target:  5'- cGCGCgAAGUGCu-CGgGGUgAUCGGCc -3'
miRNA:   3'- uCGCG-UUCAUGcuGCgCCGgUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 45083 0.69 0.488474
Target:  5'- cGCGC-GGU-CGA-GCGGCCGgaCAGCg -3'
miRNA:   3'- uCGCGuUCAuGCUgCGCCGGUa-GUCG- -5'
17137 5' -55.4 NC_004333.2 + 37598 0.69 0.478145
Target:  5'- cAGCGCAccGGaACGAcugaucuucaCGUGGCCGUggcCGGCg -3'
miRNA:   3'- -UCGCGU--UCaUGCU----------GCGCCGGUA---GUCG- -5'
17137 5' -55.4 NC_004333.2 + 29119 0.69 0.478145
Target:  5'- cGGCGCGAucGUggGCGGCGCGGUgcUCGcGCu -3'
miRNA:   3'- -UCGCGUU--CA--UGCUGCGCCGguAGU-CG- -5'
17137 5' -55.4 NC_004333.2 + 46996 0.69 0.478145
Target:  5'- cGCGCGAGgcuucgcgGCGcuCGCGGCgcugCAGCa -3'
miRNA:   3'- uCGCGUUCa-------UGCu-GCGCCGgua-GUCG- -5'
17137 5' -55.4 NC_004333.2 + 20844 0.69 0.478145
Target:  5'- gAGCGCAGGcguguCGACGUucaGGCgcgcagccgCGUCGGCg -3'
miRNA:   3'- -UCGCGUUCau---GCUGCG---CCG---------GUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 28411 0.69 0.467926
Target:  5'- cGGCGCGauGGUACGAUGC-GCauguUCGGUg -3'
miRNA:   3'- -UCGCGU--UCAUGCUGCGcCGgu--AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 36345 0.69 0.464881
Target:  5'- uGGCGCAGG-ACGuCGCGuGUCGcugcaugucguggcUCGGCg -3'
miRNA:   3'- -UCGCGUUCaUGCuGCGC-CGGU--------------AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 30371 0.69 0.457819
Target:  5'- uGuCGCAGGcGCGACgGCGGCCAgcUC-GCc -3'
miRNA:   3'- uC-GCGUUCaUGCUG-CGCCGGU--AGuCG- -5'
17137 5' -55.4 NC_004333.2 + 6669 0.7 0.437964
Target:  5'- cGGCGCuGG-GCGGCGCG-CCGUggCGGCg -3'
miRNA:   3'- -UCGCGuUCaUGCUGCGCcGGUA--GUCG- -5'
17137 5' -55.4 NC_004333.2 + 11844 0.7 0.437964
Target:  5'- gAGCGCAAGUAUGGuCGCgcacucaaGGUgaaCGUCGGUg -3'
miRNA:   3'- -UCGCGUUCAUGCU-GCG--------CCG---GUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 4954 0.7 0.428224
Target:  5'- cAGCGCGcgcuacauGGUcagcgGCGGCaGCGGC-AUCGGCa -3'
miRNA:   3'- -UCGCGU--------UCA-----UGCUG-CGCCGgUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 20638 0.7 0.418613
Target:  5'- cGGCGCGAcc-CGACGCG-CCGacgaUCAGCg -3'
miRNA:   3'- -UCGCGUUcauGCUGCGCcGGU----AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 45990 0.7 0.418613
Target:  5'- cGCGCA------ACGCGGCCAgcUCGGCa -3'
miRNA:   3'- uCGCGUucaugcUGCGCCGGU--AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 15092 0.71 0.363807
Target:  5'- aGGUgGCGAGUuucGCGGCGuCGGC-GUCGGCg -3'
miRNA:   3'- -UCG-CGUUCA---UGCUGC-GCCGgUAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.