miRNA display CGI


Results 81 - 100 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17137 5' -55.4 NC_004333.2 + 21776 0.67 0.596418
Target:  5'- uGGCGCAcGUGCGcauagaGCGCgucgagcugcucGGCCGUCAu- -3'
miRNA:   3'- -UCGCGUuCAUGC------UGCG------------CCGGUAGUcg -5'
17137 5' -55.4 NC_004333.2 + 40782 0.67 0.596418
Target:  5'- cGcCGCcGGUgACGAuCGCGGCgAUCGGg -3'
miRNA:   3'- uC-GCGuUCA-UGCU-GCGCCGgUAGUCg -5'
17137 5' -55.4 NC_004333.2 + 9703 0.67 0.61864
Target:  5'- gGGCGCAGGcGCGcCGCcGGCagcCGGUg -3'
miRNA:   3'- -UCGCGUUCaUGCuGCG-CCGguaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 22945 0.67 0.607518
Target:  5'- gAGCGCcAGUACGAuCGC-GCCgAUC-GCc -3'
miRNA:   3'- -UCGCGuUCAUGCU-GCGcCGG-UAGuCG- -5'
17137 5' -55.4 NC_004333.2 + 13532 0.67 0.607518
Target:  5'- uGCGCAuucGCGACGCGGugcgcacgaCCGUCAu- -3'
miRNA:   3'- uCGCGUucaUGCUGCGCC---------GGUAGUcg -5'
17137 5' -55.4 NC_004333.2 + 13829 0.67 0.607518
Target:  5'- cGCGCGAGcgGCG-CGCGG-CGUCcuacGCg -3'
miRNA:   3'- uCGCGUUCa-UGCuGCGCCgGUAGu---CG- -5'
17137 5' -55.4 NC_004333.2 + 35378 0.67 0.607518
Target:  5'- gAGUGCAGuaACGGCgGCGGCCAcCAu- -3'
miRNA:   3'- -UCGCGUUcaUGCUG-CGCCGGUaGUcg -5'
17137 5' -55.4 NC_004333.2 + 36824 0.67 0.607518
Target:  5'- cGUGCGAGUgACGGauCGGCUAUCuGUc -3'
miRNA:   3'- uCGCGUUCA-UGCUgcGCCGGUAGuCG- -5'
17137 5' -55.4 NC_004333.2 + 17090 0.67 0.596418
Target:  5'- cAGCGUgcacGAGU-CGAgCGCGGCgA-CGGCg -3'
miRNA:   3'- -UCGCG----UUCAuGCU-GCGCCGgUaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 29805 0.67 0.596418
Target:  5'- cGGCGUGcAGaACuACGCGaGCgGUCAGCg -3'
miRNA:   3'- -UCGCGU-UCaUGcUGCGC-CGgUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 31702 0.67 0.596418
Target:  5'- cGGC-CGAcuGUucACGcGCGCGGCCA-CAGCg -3'
miRNA:   3'- -UCGcGUU--CA--UGC-UGCGCCGGUaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 28903 0.74 0.243173
Target:  5'- cGGCGCAGGc-CGGCGCauacuuGCCGUCGGUg -3'
miRNA:   3'- -UCGCGUUCauGCUGCGc-----CGGUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 31082 0.75 0.201812
Target:  5'- gAGCGCcugcAGGUuCGGCGCcuGGcCCGUCAGCg -3'
miRNA:   3'- -UCGCG----UUCAuGCUGCG--CC-GGUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 1506 0.75 0.201812
Target:  5'- uGCGCGAGcgACGGCGaguCGGCCugcagcgugaucGUCAGCg -3'
miRNA:   3'- uCGCGUUCa-UGCUGC---GCCGG------------UAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 15280 0.76 0.17136
Target:  5'- cGUGCugcgGCGGCGCGGUCAgcaUCAGCa -3'
miRNA:   3'- uCGCGuucaUGCUGCGCCGGU---AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 19863 0.76 0.170889
Target:  5'- uGGCGCGAGUGCGaccgauuacgcccGCGCucagcagcucugGGCCAUCcGCg -3'
miRNA:   3'- -UCGCGUUCAUGC-------------UGCG------------CCGGUAGuCG- -5'
17137 5' -55.4 NC_004333.2 + 5558 0.78 0.124982
Target:  5'- uGGCGCGAGUGCagaccguucagcucGAuugUGCGGCCAUCGGg -3'
miRNA:   3'- -UCGCGUUCAUG--------------CU---GCGCCGGUAGUCg -5'
17137 5' -55.4 NC_004333.2 + 10200 0.81 0.086885
Target:  5'- cGCGCAc--GCGcAUGCGGCCGUCGGCa -3'
miRNA:   3'- uCGCGUucaUGC-UGCGCCGGUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 27878 0.85 0.046991
Target:  5'- uGCGUucGAGUACGGCGgcaucacuuCGGCCAUCAGCg -3'
miRNA:   3'- uCGCG--UUCAUGCUGC---------GCCGGUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 27299 0.66 0.685268
Target:  5'- cGGCGaaaccgAUGAUGCGGCCA--GGCu -3'
miRNA:   3'- -UCGCguuca-UGCUGCGCCGGUagUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.