miRNA display CGI


Results 21 - 40 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17137 5' -55.4 NC_004333.2 + 6705 0.66 0.663149
Target:  5'- gGGCGCAuugGCGACGa-GCCAUgCGuGCa -3'
miRNA:   3'- -UCGCGUucaUGCUGCgcCGGUA-GU-CG- -5'
17137 5' -55.4 NC_004333.2 + 40862 0.66 0.663149
Target:  5'- cGGgGCGAGcgacAUGACGCGuGCCugCGGCc -3'
miRNA:   3'- -UCgCGUUCa---UGCUGCGC-CGGuaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 41649 0.66 0.663149
Target:  5'- gGGCGCGGGc----UGCGGCCGUacgcCGGCa -3'
miRNA:   3'- -UCGCGUUCaugcuGCGCCGGUA----GUCG- -5'
17137 5' -55.4 NC_004333.2 + 18095 0.66 0.65204
Target:  5'- cAGCGCGuAGaacuCGGC-CGGCUucGUCGGCu -3'
miRNA:   3'- -UCGCGU-UCau--GCUGcGCCGG--UAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 28977 0.66 0.65204
Target:  5'- cGGCGaucAGUu--GCGCGGCCgccggGUCGGCg -3'
miRNA:   3'- -UCGCgu-UCAugcUGCGCCGG-----UAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 40225 0.66 0.65204
Target:  5'- aAGUGC----GCGACGCGGCC---GGCc -3'
miRNA:   3'- -UCGCGuucaUGCUGCGCCGGuagUCG- -5'
17137 5' -55.4 NC_004333.2 + 20460 0.66 0.65204
Target:  5'- uGCGCcGGUcGUGACGCaGCCgGUUAGCg -3'
miRNA:   3'- uCGCGuUCA-UGCUGCGcCGG-UAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 30950 0.66 0.65204
Target:  5'- cGGCGa---UACGcCgGCGGCCGUCAaGCg -3'
miRNA:   3'- -UCGCguucAUGCuG-CGCCGGUAGU-CG- -5'
17137 5' -55.4 NC_004333.2 + 10812 0.66 0.65204
Target:  5'- cGCGC-GGUACGAuaCGCcGCCAgUCGGg -3'
miRNA:   3'- uCGCGuUCAUGCU--GCGcCGGU-AGUCg -5'
17137 5' -55.4 NC_004333.2 + 19593 0.66 0.65204
Target:  5'- cGCGCGAucaACGACGCgaacaaGGUCA-CGGCg -3'
miRNA:   3'- uCGCGUUca-UGCUGCG------CCGGUaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 48177 0.66 0.648703
Target:  5'- cGGCGC-GGUGCGcGCGCccGGUugccgccugcgccuCGUCGGCa -3'
miRNA:   3'- -UCGCGuUCAUGC-UGCG--CCG--------------GUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 31460 0.66 0.642025
Target:  5'- cGCGCAAGaaggaguucgaugagACGaaacGCGCGGCUGcgucgcUCGGCa -3'
miRNA:   3'- uCGCGUUCa--------------UGC----UGCGCCGGU------AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 42556 0.66 0.640911
Target:  5'- cAGCGCAu---CaGCGCGGCUAuuuUCGGUg -3'
miRNA:   3'- -UCGCGUucauGcUGCGCCGGU---AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 9999 0.66 0.640911
Target:  5'- uGCGCGGGU----UGuCGGCCGUCuGCg -3'
miRNA:   3'- uCGCGUUCAugcuGC-GCCGGUAGuCG- -5'
17137 5' -55.4 NC_004333.2 + 33673 0.66 0.640911
Target:  5'- gAGCGUAucUGCGACaugggacaGCGGCU-UCGGCu -3'
miRNA:   3'- -UCGCGUucAUGCUG--------CGCCGGuAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 2514 0.66 0.640911
Target:  5'- cGCGCAGGUGuuCGcCGCG-CCGUaccaaGGCa -3'
miRNA:   3'- uCGCGUUCAU--GCuGCGCcGGUAg----UCG- -5'
17137 5' -55.4 NC_004333.2 + 30294 0.66 0.629775
Target:  5'- cGCGCGGcGcGCGAUcgaucaggcaGCGGCUAUCAcgGCa -3'
miRNA:   3'- uCGCGUU-CaUGCUG----------CGCCGGUAGU--CG- -5'
17137 5' -55.4 NC_004333.2 + 8702 0.66 0.629775
Target:  5'- cGCGcCGAGcuCGACGUcGCgCAUCGGCu -3'
miRNA:   3'- uCGC-GUUCauGCUGCGcCG-GUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 29258 0.66 0.629775
Target:  5'- uGCGCGGGUuCGugcaGCGGCCcgacCAGUc -3'
miRNA:   3'- uCGCGUUCAuGCug--CGCCGGua--GUCG- -5'
17137 5' -55.4 NC_004333.2 + 9896 0.66 0.629775
Target:  5'- uGCGCucagGCGACGCGGaCGggcaGGCa -3'
miRNA:   3'- uCGCGuucaUGCUGCGCCgGUag--UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.