miRNA display CGI


Results 1 - 19 of 19 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17139 3' -48.1 NC_004333.2 + 15418 0.66 0.971327
Target:  5'- cGCGCGcgUCUgc-GCCGa--GAUCGACa -3'
miRNA:   3'- -CGCGCa-AGGuaaCGGUaaaCUAGCUG- -5'
17139 3' -48.1 NC_004333.2 + 27493 0.66 0.96795
Target:  5'- cCGCGaUCCAUugcgUGCgGUUgauguaagcGAUCGACg -3'
miRNA:   3'- cGCGCaAGGUA----ACGgUAAa--------CUAGCUG- -5'
17139 3' -48.1 NC_004333.2 + 40228 0.66 0.96795
Target:  5'- uGCGCGacgcggCCg--GCCAaccGAUCGACg -3'
miRNA:   3'- -CGCGCaa----GGuaaCGGUaaaCUAGCUG- -5'
17139 3' -48.1 NC_004333.2 + 30154 0.66 0.96795
Target:  5'- aCGCGUUCCGUcggcGCUAcg-GcAUCGACc -3'
miRNA:   3'- cGCGCAAGGUAa---CGGUaaaC-UAGCUG- -5'
17139 3' -48.1 NC_004333.2 + 21654 0.67 0.956152
Target:  5'- uGCGCGcgCagaucgGCCAUUUGcUCGAa -3'
miRNA:   3'- -CGCGCaaGguaa--CGGUAAACuAGCUg -5'
17139 3' -48.1 NC_004333.2 + 16850 0.67 0.956152
Target:  5'- aGCGCGU--CGcgGCCAaggcGAUCGACg -3'
miRNA:   3'- -CGCGCAagGUaaCGGUaaa-CUAGCUG- -5'
17139 3' -48.1 NC_004333.2 + 42630 0.67 0.956152
Target:  5'- aCGCGgauaaggCCGUgaUGCCcgUUGA-CGGCg -3'
miRNA:   3'- cGCGCaa-----GGUA--ACGGuaAACUaGCUG- -5'
17139 3' -48.1 NC_004333.2 + 48169 0.67 0.951637
Target:  5'- uGCGCGcgCCcgGUUGCCGccUGcgccucGUCGGCa -3'
miRNA:   3'- -CGCGCaaGG--UAACGGUaaAC------UAGCUG- -5'
17139 3' -48.1 NC_004333.2 + 37307 0.67 0.941699
Target:  5'- aCGCGUUCCAgucgGUCGcggcggUGcUCGACg -3'
miRNA:   3'- cGCGCAAGGUaa--CGGUaa----ACuAGCUG- -5'
17139 3' -48.1 NC_004333.2 + 9999 0.68 0.924469
Target:  5'- uGCGCGggUUGUcgGCCGUcUGcgCGACg -3'
miRNA:   3'- -CGCGCaaGGUAa-CGGUAaACuaGCUG- -5'
17139 3' -48.1 NC_004333.2 + 38616 0.68 0.911418
Target:  5'- gGCGCGccgcugcCCGUggUGCCcgUucUGAUCGGCc -3'
miRNA:   3'- -CGCGCaa-----GGUA--ACGGuaA--ACUAGCUG- -5'
17139 3' -48.1 NC_004333.2 + 27216 0.69 0.88953
Target:  5'- cGCGCGguaCAUcGCCGUcgUGAUCGcaGCg -3'
miRNA:   3'- -CGCGCaagGUAaCGGUAa-ACUAGC--UG- -5'
17139 3' -48.1 NC_004333.2 + 12351 0.7 0.837956
Target:  5'- uGCGCGccgCCggUGCCGUguacguuGUCGACg -3'
miRNA:   3'- -CGCGCaa-GGuaACGGUAaac----UAGCUG- -5'
17139 3' -48.1 NC_004333.2 + 24760 0.7 0.837956
Target:  5'- cGCGCGgaUCGgcaUGCag-UUGAUCGGCg -3'
miRNA:   3'- -CGCGCaaGGUa--ACGguaAACUAGCUG- -5'
17139 3' -48.1 NC_004333.2 + 22501 0.7 0.828445
Target:  5'- uCGCGUUCCucgGCgGUcUGAUCGGu -3'
miRNA:   3'- cGCGCAAGGuaaCGgUAaACUAGCUg -5'
17139 3' -48.1 NC_004333.2 + 13722 0.72 0.756012
Target:  5'- aGCGCG-UCCAUgcucgUGCCGUUgaaGUCGAg -3'
miRNA:   3'- -CGCGCaAGGUA-----ACGGUAAac-UAGCUg -5'
17139 3' -48.1 NC_004333.2 + 45315 0.72 0.756012
Target:  5'- cGCGCGcUUCGaUGCCGgacaGGUCGGCa -3'
miRNA:   3'- -CGCGCaAGGUaACGGUaaa-CUAGCUG- -5'
17139 3' -48.1 NC_004333.2 + 2347 0.75 0.583119
Target:  5'- cGUGCGg-CCGUUGCgCAgcuggaagUUGAUCGACg -3'
miRNA:   3'- -CGCGCaaGGUAACG-GUa-------AACUAGCUG- -5'
17139 3' -48.1 NC_004333.2 + 12646 1.14 0.002128
Target:  5'- aGCGCGUUCCAUUGCCAUUUGAUCGACg -3'
miRNA:   3'- -CGCGCAAGGUAACGGUAAACUAGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.